Detail information of GWHGAAZE003400


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP22495.11.95264E-87hypothetical protein JCGZ_26326 [Jatropha curcas]
COGYP_003805711.11E-13RNP-1 like RNA-binding protein
Swissprottr|Q9FJN9|PABN2_ARATH5E-77Polyadenylate-binding protein 2 {ECO:0000303|PubMed:18479511}
trEMBLtr|A0A067JR63|A0A067JR63_JATCU7E-88Uncharacterized protein {ECO:0000313|EMBL:KDP22495.1}
TAIR10AT5G65260.11E-61RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9718284297187180-
GWHAAZE00000001mRNA9718284297187180-
GWHAAZE00000001exon9718284297182869-
GWHAAZE00000001exon9718372897183852-
GWHAAZE00000001exon9718395197184142-
GWHAAZE00000001exon9718709797187180-
GWHAAZE00000001CDS9718709797187180-
GWHAAZE00000001CDS9718395197184142-
GWHAAZE00000001CDS9718372897183852-
GWHAAZE00000001CDS9718284297182869-
Transcript Sequence

Network for GWHGAAZE003400

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_124927.60E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14396PABPN1, PABP2 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE003400.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.644
SRR3591706second leaf29.629
SRR3591707mature leaf26.485
SRR3591708Shoot apex39.759
SRR3591709Stem21.256
SRR3591710White floral bud35.271
SRR3591711White flower38.447
SRR3591712Green floral bud27.346
SRR3591713Yellow flower36.247
SRP173429 SRR8316895Juvenile bud stage 23.301
SRR8316896Juvenile bud stage 31.600
SRR8316897Juvenile bud stage 15.861
SRR8316894Third green stage 13.710
SRR8316900Third green stage 33.756
SRR8316901Third green stage 31.634
SRR8316898Complete white stage 11.617
SRR8316899Complete white stage 46.349
SRR8316903Complete white stage 24.545
SRR8316902Silver flowering stage23.455
SRR8316904Silver flowering stage27.010
SRR8316905Silver flowering stage9.169
SRR8316906Gold flowering stage 36.815
SRR8316907Gold flowering stage 36.865
SRR8316908Gold flowering stage 41.862
SRP132670SRR6706286Control24.463
SRR6706287Light intensity 50%25.321
SRR6706288Light intensity 20%25.743
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.574
CNS0095593Slightly white alabastrum(diploid) 232.291
CNS0095594Slightly white alabastrum(diploid) 331.141
CNS0095595Whole white alabastrum(diploid) 223.537
CNS0095596Whole white alabastrum(diploid) 320.380
CNS0095597Whole white alabastrum(diploid) 419.683
CNS0095598Silvery flower (diploied) 127.176
CNS0095599Silvery flower (diploied) 225.535
CNS0095600Silvery flower (diploied) 328.786
CNS0095601Golden flower (diploid) 120.158
CNS0095602Golden flower (diploid) 230.053
CNS0095603Golden flower (diploid) 327.736
CNS0095604Slightly white alabastrum(tetraploid) 133.139
CNS0095605Slightly white alabastrum(tetraploid) 225.670
CNS0095606Slightly white alabastrum(tetraploid) 331.064
CNS0095607Whole white alabastrum(tetraploid) 120.185
CNS0095608Whole white alabastrum(tetraploid) 215.442
CNS0095609Whole white alabastrum(tetraploid) 324.600
CNS0095610Silvery flower (tetraploid) 127.836
CNS0095611Silvery flower (tetraploid) 227.077
CNS0095612Silvery flower (tetraploid) 335.094
CNS0095613Golden flower (tetraploid) 127.615
CNS0095614Golden flower (tetraploid) 232.332
CNS0095615Golden flower (tetraploid) 326.914
CRA001975CRR073297Stem 132.427
CRR073298Stem 229.963
CRR073299Stem 330.575
CRR073300Leaf 127.720
CRR073301Leaf 223.727
CRR073302Leaf 325.766
CRR073303Juvenile bud 118.005
CRR073304Juvenile bud 221.637
CRR073305Juvenile bud 322.073
CRR073306Third green 115.401
CRR073307Third green 217.150
CRR073308Third green 317.216
CRR073309Second white 118.239
CRR073310Second white 215.719
CRR073311Second white 318.804
CRR073312Silver flowering 116.842
CRR073313Silver flowering 215.000
CRR073314Silver flowering 319.364
CRR073315Gold flowering 126.605
CRR073316Gold flowering 230.397
CRR073317Gold flowering 317.246
CRR073318Tawny withering 136.061
CRR073319Tawny withering 233.089
CRR073320Tawny withering 327.910