Gene detail

Detail information of GWHGAAZE003404

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002531219.1	1.2291E-149	histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
COG	YP_003280830.1	7E-16	nuclear protein SET
Swissprot	tr\|O82175\|SUVH5_ARATH	9E-141	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5
trEMBL	tr\|B9SZ00\|B9SZ00_RICCO	5E-150	Histone-lysine n-methyltransferase, suvh, putative {ECO:0000313\|EMBL:EEF31155.1}
TAIR10	AT2G35160.1	1E-115	SU(VAR)3-9 homolog 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97264587	97265669	+
GWHAAZE00000001	mRNA	97264587	97265669	+
GWHAAZE00000001	exon	97264587	97265331	+
GWHAAZE00000001	exon	97265383	97265669	+
GWHAAZE00000001	CDS	97264587	97265331	+
GWHAAZE00000001	CDS	97265383	97265669	+

Transcript Sequence
>GWHTAAZE003410 ATGGAAGCAAGAACCCCAGTTCGGGTTATTCGAAGTTCTAGATCTCGGAAGGCATCTAGTACAAATAGTAGAAAGGGAGTGCAGAAAATATATATTTATGATGGGTTGTATACTGTAAGTAAGTCTTGGAAAGAAAGAGGACAATATGGGAAATTAGTATTCAAGTATGAGTTGAATAGAATTCCGGGGCAGCCCAAACTTACTCATGTGGTTAAAGCGAGTAGTAGGCCGGGAAAAACTAAATTGGACCATGATCGTTGTGTGGTGGATGATATTTCTCAAGGGAAAGAGAAGGTACCAATCTGTGCAATGAATGCCATTGATGATGAGAAACCGACACCATTTAGCTACATGACTGAAATGATATACCCAAACCTGTATGGGACCTCTATTCCTAGAAGTTGCGATTGCGCTGATGGATGCTCGGATTTTGTACAATGTTGTTGTGTAGTCAAGAACGGTGGCGAGATACCCTTTAATGACGATGGGGCCATTGTTACACCAAAGCCTGCTATTTATGAATGTGGTCCGTTTTGCAAATGTCCCCCTTCGTGCAAAAATAGAGTTAGTCAACGAGGGATTCGATATCAATTAGAGATCTTCAAGACTCAGAAAAGGGGATGGGGTGTTAGATCACGAAATTTTATCCCTAGTGGAAGTTTTATATGCGAGTATGTCGGTGAGATTCTTGGTGACCACGAAGCTGATGGTAGGGCGGGTGAGGATGAGTATTTATTCGACATAGGTACAAATGACAATGACTTCGCTATTGATGCGGCGCATTTTGGGAACATAGGGAGGTTCATCAACCATAGTTGCTCCCCTAATTTGTATGCTCAAGATGTCTTTTATGATCACGGTGACAAGAGATTGCCTCACATAATGCTATTTGCTACCGAGAATATACCACCTTTACAAGAGTTGAATTATGATTACAACTATAAGATAAATCAAGTTTACGATGCTAATGGCAATATCAAGAGGAAGGATTGTCATTGTGGTGCTCGTGATTGTACTGGGAGGTTGTATTAA

Network for GWHGAAZE003404

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	1	64	2.50E-14
PF05033.17	Pre-SET	92	188	2.10E-17
PF00856.29	SET	207	313	5.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.769
	SRR3591706	second leaf	0.037
	SRR3591707	mature leaf	0.355
	SRR3591708	Shoot apex	0.523
	SRR3591709	Stem	0.503
	SRR3591710	White floral bud	0.477
	SRR3591711	White flower	0.521
	SRR3591712	Green floral bud	0.436
	SRR3591713	Yellow flower	0.183
SRP173429	SRR8316895	Juvenile bud stage	0.706
	SRR8316896	Juvenile bud stage	0.942
	SRR8316897	Juvenile bud stage	0.468
	SRR8316894	Third green stage	0.432
	SRR8316900	Third green stage	1.231
	SRR8316901	Third green stage	0.931
	SRR8316898	Complete white stage	0.254
	SRR8316899	Complete white stage	1.253
	SRR8316903	Complete white stage	0.896
	SRR8316902	Silver flowering stage	0.164
	SRR8316904	Silver flowering stage	0.588
	SRR8316905	Silver flowering stage	0.195
	SRR8316906	Gold flowering stage	0.968
	SRR8316907	Gold flowering stage	1.253
	SRR8316908	Gold flowering stage	0.822
SRP132670	SRR6706286	Control	0.486
	SRR6706287	Light intensity 50%	0.491
	SRR6706288	Light intensity 20%	0.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.823
	CNS0095593	Slightly white alabastrum(diploid) 2	1.130
	CNS0095594	Slightly white alabastrum(diploid) 3	2.283
	CNS0095595	Whole white alabastrum(diploid) 2	1.195
	CNS0095596	Whole white alabastrum(diploid) 3	1.190
	CNS0095597	Whole white alabastrum(diploid) 4	1.423
	CNS0095598	Silvery flower (diploied) 1	0.264
	CNS0095599	Silvery flower (diploied) 2	0.721
	CNS0095600	Silvery flower (diploied) 3	1.274
	CNS0095601	Golden flower (diploid) 1	0.189
	CNS0095602	Golden flower (diploid) 2	0.717
	CNS0095603	Golden flower (diploid) 3	0.697
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.978
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.473
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.012
	CNS0095610	Silvery flower (tetraploid) 1	0.972
	CNS0095611	Silvery flower (tetraploid) 2	1.311
	CNS0095612	Silvery flower (tetraploid) 3	1.392
	CNS0095613	Golden flower (tetraploid) 1	1.112
	CNS0095614	Golden flower (tetraploid) 2	1.236
	CNS0095615	Golden flower (tetraploid) 3	0.863
CRA001975	CRR073297	Stem 1	1.028
	CRR073298	Stem 2	0.898
	CRR073299	Stem 3	0.427
	CRR073300	Leaf 1	1.257
	CRR073301	Leaf 2	0.744
	CRR073302	Leaf 3	1.034
	CRR073303	Juvenile bud 1	0.543
	CRR073304	Juvenile bud 2	1.061
	CRR073305	Juvenile bud 3	1.181
	CRR073306	Third green 1	0.993
	CRR073307	Third green 2	0.095
	CRR073308	Third green 3	0.128
	CRR073309	Second white 1	0.624
	CRR073310	Second white 2	0.249
	CRR073311	Second white 3	0.240
	CRR073312	Silver flowering 1	0.090
	CRR073313	Silver flowering 2	0.402
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.448
	CRR073316	Gold flowering 2	2.145
	CRR073317	Gold flowering 3	0.885
	CRR073318	Tawny withering 1	0.799
	CRR073319	Tawny withering 2	0.501
	CRR073320	Tawny withering 3	0.759