Gene detail

Detail information of GWHGAAZE003411

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI38579.3	0	unnamed protein product [Vitis vinifera]
COG	NP_295256.1	1E-20	hypothetical protein DR_1533
Swissprot	tr\|O82175\|SUVH5_ARATH	0	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5
trEMBL	tr\|F6I2M3\|F6I2M3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61190.1}
TAIR10	AT2G35160.1	2E-150	SU(VAR)3-9 homolog 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97406132	97407661	+
GWHAAZE00000001	mRNA	97406132	97407661	+
GWHAAZE00000001	exon	97406132	97407323	+
GWHAAZE00000001	exon	97407375	97407661	+
GWHAAZE00000001	CDS	97406132	97407323	+
GWHAAZE00000001	CDS	97407375	97407661	+

Transcript Sequence
>GWHTAAZE003417 ATGAAAGTGCGGGAGGCTTTGAATCTCTTTCAAGAGTTACATAAAATTCTTTCACACGAAGATAAAAAGAAGTCAAATGGAAAGGGGAAGAATGCTGTGAAAATCATTTCTGATGCTGCTATGCTGCTCAAACAACACCAAAAATGGGTTAATACAAATGAACGAAACATAGGAGCTCTCCCTGGTGTTTTTGTGGGAGACCAATTTCAGTTCAGAGCTGAACTTTGTATTATTGGCCTACACCAACAGTTTAATTCTGGTATAGATTATGTGAAGAAAGACGGAACAACTTTTGCTACCAGCATTGTGTCTTCCGGTCGTTATGCAAATGAAACAGAATCATCCGATGTGTTAATTTATTCAGGTCAAGGTGGGAATCCAAAAATTCGTTCTAAGGAACCTGAAGATCAAAAACTCGAACGAGGTAATCTTGCCTTAAAGAATAGCATGGAAGCAAGAACCCCAGTTCGGGTTATTCGAAGTTCTAGATCTCGGAAGGCATCTAGTACAAATAGTAGAAAGGGAGTGCAGAAAATATATATTTATGATGGGTTGTATACTGTAAGTAAGTCTTGGAAAGAAAGAGGACAATATGGGAAATTAGTATTCAAGTATGAGTTGAATAGAATTCCGGGGCAGCCCAAACTTACTCATGTGGTTAAAGCGAGTAGTAGGCCGGGAAAAACTAAATTGGACCATGATCGTTGTGTGGTGGATGATATTTCTCAAGGGAAAGAGAAGGTACCAATCTGTGCAATGAATGCCATTGATGATGAGAAACCGACACCATTTAGCTACATGACTGAAATGATATACCCAAACCTGTATGGGACCTCTATTCCTAGAAGTTGCGATTGCGCTGATGGATGCTCGGATTTTGTACAATGTTGTTGTGTAGTCAAGAATGGTGGCGAGATACCCTTTAATGATGATGGGGCCATTGTTACACCAAAGCCTGCTATTTATGAATGTGGTCCATTTTGCAAATGTCCCCCTTCGTGCAAAAATAGAGTTAGCCAACGAGGGATTCGATATCAATTAGAGATCTTCAAGACTCAGAAAAGGGGATGGGGTGTTAGATCACGAAATTTTATCCCTAGTGGAAGTTTTATATGCGAGTATGTCGGTGAGATTCTTGGTGACCACGAAGCTGATGGTAGGGCGGGTGAGGATGAGTATTTATTCGACATAGGTACAAATGACAATGACTTCGCTATTGATGCAGCACATTTTGGGAACATAGGGAGGTTCATCAACCATAGTTGCTCCCCTAATTTGTATGCTCAAGATGTCTTTTATGATCACGATGACAAGAGATTGCCTCACATAATGCTATTTGCTACCGAGAATATACCACCTTTACAAGAGTTGAATTATGATTACAACTATAAGATAAATCAAGTTTACGATGCTAATGGAAATATCAAGAGGAAGGATTGTCATTGTGGTGCTCGTGATTGTACTGGGAGGTTGTATTAA

Network for GWHGAAZE003411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	57	213	6.30E-49
PF05033.17	Pre-SET	241	337	3.90E-17
PF00856.29	SET	356	462	1.00E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0016571	biological_process	histone methylation
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.752
	SRR3591706	second leaf	0.071
	SRR3591707	mature leaf	0.071
	SRR3591708	Shoot apex	0.627
	SRR3591709	Stem	0.208
	SRR3591710	White floral bud	0.600
	SRR3591711	White flower	0.518
	SRR3591712	Green floral bud	0.462
	SRR3591713	Yellow flower	0.266
SRP173429	SRR8316895	Juvenile bud stage	0.803
	SRR8316896	Juvenile bud stage	0.738
	SRR8316897	Juvenile bud stage	1.286
	SRR8316894	Third green stage	0.617
	SRR8316900	Third green stage	1.951
	SRR8316901	Third green stage	0.977
	SRR8316898	Complete white stage	0.563
	SRR8316899	Complete white stage	1.353
	SRR8316903	Complete white stage	0.556
	SRR8316902	Silver flowering stage	0.273
	SRR8316904	Silver flowering stage	0.833
	SRR8316905	Silver flowering stage	0.372
	SRR8316906	Gold flowering stage	0.412
	SRR8316907	Gold flowering stage	0.726
	SRR8316908	Gold flowering stage	1.724
SRP132670	SRR6706286	Control	0.583
	SRR6706287	Light intensity 50%	0.446
	SRR6706288	Light intensity 20%	0.608
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.388
	CNS0095593	Slightly white alabastrum(diploid) 2	1.146
	CNS0095594	Slightly white alabastrum(diploid) 3	1.896
	CNS0095595	Whole white alabastrum(diploid) 2	1.534
	CNS0095596	Whole white alabastrum(diploid) 3	1.303
	CNS0095597	Whole white alabastrum(diploid) 4	1.376
	CNS0095598	Silvery flower (diploied) 1	0.681
	CNS0095599	Silvery flower (diploied) 2	1.023
	CNS0095600	Silvery flower (diploied) 3	1.235
	CNS0095601	Golden flower (diploid) 1	0.979
	CNS0095602	Golden flower (diploid) 2	1.016
	CNS0095603	Golden flower (diploid) 3	1.486
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.825
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.930
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.446
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.272
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.232
	CNS0095610	Silvery flower (tetraploid) 1	3.377
	CNS0095611	Silvery flower (tetraploid) 2	2.668
	CNS0095612	Silvery flower (tetraploid) 3	4.541
	CNS0095613	Golden flower (tetraploid) 1	3.023
	CNS0095614	Golden flower (tetraploid) 2	2.946
	CNS0095615	Golden flower (tetraploid) 3	2.309
CRA001975	CRR073297	Stem 1	0.740
	CRR073298	Stem 2	0.776
	CRR073299	Stem 3	0.107
	CRR073300	Leaf 1	0.859
	CRR073301	Leaf 2	0.602
	CRR073302	Leaf 3	0.243
	CRR073303	Juvenile bud 1	0.262
	CRR073304	Juvenile bud 2	0.671
	CRR073305	Juvenile bud 3	0.437
	CRR073306	Third green 1	0.093
	CRR073307	Third green 2	0.145
	CRR073308	Third green 3	0.141
	CRR073309	Second white 1	0.379
	CRR073310	Second white 2	0.550
	CRR073311	Second white 3	0.136
	CRR073312	Silver flowering 1	0.145
	CRR073313	Silver flowering 2	0.140
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.608
	CRR073316	Gold flowering 2	1.331
	CRR073317	Gold flowering 3	0.632
	CRR073318	Tawny withering 1	0.249
	CRR073319	Tawny withering 2	0.113
	CRR073320	Tawny withering 3	0.184