Gene detail

Detail information of GWHGAAZE003437

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002301250.1	9.0684E-140	60S ribosomal protein L15 [Populus trichocarpa]
COG	YP_004576948.1	1E-55	50S ribosomal protein L15e
Swissprot	tr\|O82528\|RL15_PETHY	7E-136	60S ribosomal protein L15
trEMBL	tr\|B9GPA1\|B9GPA1_POPTR	3E-140	Ribosomal protein L15 {ECO:0000256\|RuleBase:RU000663}
TAIR10	AT4G16720.1	2E-89	Ribosomal protein L23/L15e family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97786389	97788438	+
GWHAAZE00000001	mRNA	97786389	97788438	+
GWHAAZE00000001	exon	97786389	97786553	+
GWHAAZE00000001	exon	97787337	97787534	+
GWHAAZE00000001	exon	97787989	97788438	+
GWHAAZE00000001	CDS	97786389	97786553	+
GWHAAZE00000001	CDS	97787337	97787534	+
GWHAAZE00000001	CDS	97787989	97788234	+
GWHAAZE00000001	three_prime_UTR	97788235	97788438	+

Transcript Sequence
>GWHTAAZE003443 GCGTACACTTATGTATCGGAGTTATGGAGGAAGAAGCAATCGGATGTGATGAGGTTTTTGCTGAGGGTGAGGTGCTGGGAGTACCGTCAGCTTCCTTCCATTGTTCGTGTCACTCATCCCACTCGTCCTGATAAGGCACGCCGTTTAGGTTACAAAGCCAAGCAGGGTTACGTTGTCTATCGTGTTCGTGTTAGACGTGGTGGACGGAAGAGACCAGTTCCCAAGGGTATTGTGTATGGGAAGCCCACGAACCAGGGTGTCACTCAGCTGAAATTTCAACGGAGCAAGCGCTCAGTCGCAGAAGAACGTGCTGGTCGGAAACTGGCTGGACTCAAGGTCCTCAATTCTTATTGGATCAACGAGGATTCAACTTACAAGTACTTTGAAGTAATATTGGTTGATGCTGCCCACAATGCAATCAGAAATGACCCAAGGATAAACTGGATTTGCAACCCTGTCCACAAGCACAGGGAGCTTCGCGGTCTAACTTCTGCTGGTAAGAAATACAGGGGTCTGCGTGGAAGGGGACACTTGCACCACAAGGCTCGACCTTCAAGAAGGGCTACCTGGAAGAGAAACAACACTCTTTCCCTTCGTCGCTATCGTTGATTTATATTGCAACTTGGTCGGGTGTTTCTATTATTGTCCTACTTTTGGGTTTTCTGTTCTAGGATTTAAAAATCTTTTCTTTTGGTAGAAGTTTTCGGGATATCTTGACTGAACATGTTAACCTTGCTGAGTCAGGATATTTAAGTTTTGTTGTTATTTCATTTATGGGATATTTATAGTATCTGGGATTATAATTTCCTGCAA

Network for GWHGAAZE003437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00827.18	Ribosomal_L15e	1	188	9.60E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02877	RP-L15e, RPL15	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	104.969
	SRR3591706	second leaf	45.673
	SRR3591707	mature leaf	18.833
	SRR3591708	Shoot apex	164.373
	SRR3591709	Stem	53.478
	SRR3591710	White floral bud	41.562
	SRR3591711	White flower	62.126
	SRR3591712	Green floral bud	117.088
	SRR3591713	Yellow flower	35.032
SRP173429	SRR8316895	Juvenile bud stage	73.420
	SRR8316896	Juvenile bud stage	100.572
	SRR8316897	Juvenile bud stage	52.301
	SRR8316894	Third green stage	36.002
	SRR8316900	Third green stage	119.780
	SRR8316901	Third green stage	103.827
	SRR8316898	Complete white stage	15.228
	SRR8316899	Complete white stage	84.185
	SRR8316903	Complete white stage	24.587
	SRR8316902	Silver flowering stage	14.063
	SRR8316904	Silver flowering stage	14.010
	SRR8316905	Silver flowering stage	7.207
	SRR8316906	Gold flowering stage	24.554
	SRR8316907	Gold flowering stage	27.692
	SRR8316908	Gold flowering stage	30.565
SRP132670	SRR6706286	Control	86.095
	SRR6706287	Light intensity 50%	87.403
	SRR6706288	Light intensity 20%	99.487
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	139.445
	CNS0095593	Slightly white alabastrum(diploid) 2	140.767
	CNS0095594	Slightly white alabastrum(diploid) 3	140.466
	CNS0095595	Whole white alabastrum(diploid) 2	108.436
	CNS0095596	Whole white alabastrum(diploid) 3	130.400
	CNS0095597	Whole white alabastrum(diploid) 4	83.437
	CNS0095598	Silvery flower (diploied) 1	53.778
	CNS0095599	Silvery flower (diploied) 2	53.914
	CNS0095600	Silvery flower (diploied) 3	32.490
	CNS0095601	Golden flower (diploid) 1	44.114
	CNS0095602	Golden flower (diploid) 2	28.698
	CNS0095603	Golden flower (diploid) 3	30.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	109.931
	CNS0095605	Slightly white alabastrum(tetraploid) 2	121.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	126.894
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.526
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.280
	CNS0095609	Whole white alabastrum(tetraploid) 3	98.580
	CNS0095610	Silvery flower (tetraploid) 1	34.415
	CNS0095611	Silvery flower (tetraploid) 2	30.435
	CNS0095612	Silvery flower (tetraploid) 3	21.060
	CNS0095613	Golden flower (tetraploid) 1	16.662
	CNS0095614	Golden flower (tetraploid) 2	28.284
	CNS0095615	Golden flower (tetraploid) 3	11.790
CRA001975	CRR073297	Stem 1	116.599
	CRR073298	Stem 2	112.754
	CRR073299	Stem 3	133.155
	CRR073300	Leaf 1	96.883
	CRR073301	Leaf 2	106.991
	CRR073302	Leaf 3	146.778
	CRR073303	Juvenile bud 1	101.231
	CRR073304	Juvenile bud 2	65.028
	CRR073305	Juvenile bud 3	79.146
	CRR073306	Third green 1	7.922
	CRR073307	Third green 2	6.480
	CRR073308	Third green 3	9.163
	CRR073309	Second white 1	13.938
	CRR073310	Second white 2	7.952
	CRR073311	Second white 3	6.704
	CRR073312	Silver flowering 1	6.623
	CRR073313	Silver flowering 2	14.684
	CRR073314	Silver flowering 3	7.491
	CRR073315	Gold flowering 1	43.979
	CRR073316	Gold flowering 2	41.812
	CRR073317	Gold flowering 3	48.387
	CRR073318	Tawny withering 1	97.205
	CRR073319	Tawny withering 2	85.920
	CRR073320	Tawny withering 3	113.800