Gene detail

Detail information of GWHGAAZE003438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05348.1	0	unnamed protein product [Coffea canephora]
COG	YP_004775215.1	2E-55	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9FII5\|TDR_ARATH	0	Leucine-rich repeat receptor-like protein kinase TDR (Precursor)
trEMBL	tr\|A0A068UCI1\|A0A068UCI1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05348.1}
TAIR10	AT5G61480.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97812935	97816413	+
GWHAAZE00000001	mRNA	97812935	97816413	+
GWHAAZE00000001	exon	97812935	97812981	+
GWHAAZE00000001	exon	97813242	97815830	+
GWHAAZE00000001	exon	97816047	97816413	+
GWHAAZE00000001	CDS	97812935	97812981	+
GWHAAZE00000001	CDS	97813242	97815830	+
GWHAAZE00000001	CDS	97816047	97816413	+

Transcript Sequence
>GWHTAAZE003444 ATGAATCACCACCCTCAGCTCCACACCCCAGCTAGCACTCCTAAAAATACTCCCCTCATCCGCCTCCAAACTCTCCCTTTCCCTCTTCAACTTTCATCTCTTCTCTCACTCAAATCTTCCTTAATTGACCCTCACAACACCTTCCATGATTGGGACTCCACCCCAGCGTTCTCCAGGCCTGGGTCAGGTCCCATTTGGTGCACGTGGTCCGGTGTTAAATGCGACCCTACAACTTATCAAATCACCTCGTTAAATCTCTCCAAACGGAACCTCTCCGGTACAATTCCTGCCGATATTAGATACTTGTGGCACCTTCACCACTTCAACATAAGCGGTAACGCTTTTGATGGTACTCTACAGACCGCCATTTTTGAATTACCCTATCTCAGAACACTCGACATAAGCCATAACTATTTCAACTCCACATTTCCACTAGGTTTATCCAAGCTTAAGAACCTCACTCTCCTAAATGCTTACAGTAACAGCTTCACCGGTCCGTTGCCGCTAGACATCGTTCACCTTCAGTTCCTCGAGCAACTCAACCTCGGCGGGAGTTACTTTGACGCTACTATTCCGGCAAGTTACGGCAGTTTTCTTAGGCTGAAATTCTTGTACCTCGCCGGAAATCTACTCACAGGTCCTATTCCAGCTCAATTGGGATTCTTAACTCAGCTTGAGCATTTAGAAATCGGATACAATGAATTCACCGGCGGAATTCCAGTTCAATACGGCATGTTATCAAATTTAGATTACTTTGACATATCATCTGCTAACCTCTCTGGTGATCTTCCCGGTGAGTTAGGTAATTTGACGAAGCTAGAGATATTGTTGATATTCAAAAACCGTTTCTCTGGTTCAATTCCGGAAAGTTTCGGTCAATTGGAAGCCCTAAAATACCTTGACGCATCAGATAACAACCTTACTGGTTTCATTCCAAGAGAATTTTCGTCCCTCAAGGAACTGAAGGGGTTGAACTTGATGAACAACGCATTAACAGGTGAAATACCAGAAGGTATAGGTGAGCTTCCAAATCTCGACACCTTATCTCTGTGGAACAACTCGCTCACTGGAATTTTACCGCAAAAGTTGGGATCTAATTCTAATTTACAGAAGGTCGATGTATCTTCAAATTCACTCGCCGGTCCGGTACCACCAAATCTTTGCCGTGGAAACAAGTTAGTAAAACTCATCCTATTTTCAAACAAATTGGTTGGTGAGCTTCCTTCATCGATAGCCAATTGCACGTCCTTGTCGAGGTTCCGGATCCAAAAGAACAATTTCAATGGCTCCATACCTTTCGGATTTGGCTTTTTGCCGAATTTAACTTTTATGGATGTTAGCAATAACAATTTCAGTGGTTCAATTCCCAAAGATTTCGGCAATGCAGCCAAGTTAGAGTACCTGAATGTATCGGCCAACTCATTCAACAGCGAGTTACCAGGTAACATTTGGAGCTCGCCGAGTTTACAGATCTTCTCCGCGAGTTTCGCTAAGCTCGTCGGAAAGATTCCAGACTTCCTGGGATGCAGAAATTTGTACAGAATTGAACTGGAAGGGAACAATTTGAGTGACAGCATTCCGTGGGACATTGATCACTGCGAGAAGCTCATTTGCTTGAACTTACGCCTTAATTCTCTTACAGGAATCATTCCATGGGAGATATCAAGTCTTCCTTCAATCACCGACGTTGACTTATCTCACAACTTTCTCACCGGTTCAATTCCTTCGAATTTTGGAAATTGTAGCACATTGGAAGCCTTTAATGTCTCATATAATCAGCTTATTGGCCCCGTTCCGTCAACCGGAACAATCTTCTCGAGTTTCCATCCGTCGTCGTTCATGGAAAATGAAGGCCTATGCGGCGATGTGGTGGGAAAGCCGTGTGGAACCAATGGTGGTGTTGCCGGCGGTGGGACAGAGCTAAGGCAGCAGCCGAAGAAAACCTCCGGTGCAATCGTGTGGATCATGGCGATGGCATTTGGGATTGGACTTTTCATCCTCATCGCCGGTAGCCGGTGCTTCCACGCGAGTTATCAGCAGAGGTTCGCGGCCGAAGGACGAGAGATCGGACCTTGGAGATTAACCGCCTTCCAGCGGTTGAATTTCACGGCCGATGATGTGCTCGAGTGTTTGTCGATGACCGATAAGATCGTGGGGATGGGGTCCACTGGGACCGTCTACAAAGCGGAGATGCCAGGTGGAGAGATCATAGCAGTGAAGAAGTTATGGGGAAAGCATAAAGAGACGATCAGACGGAGGAGAGGAGTGTTGGCGGAGGTTGAAGTTCTAGGGAACGTGAGGCACAGGAACATAGTGAGATTGTTAGGTTGCTGCAGCAACAGCGAGTGCACCATGCTGCTTTACGAATATATGCCTAATGGAAGTTTAGATGACTTGTTGCATGGGAAAAGCAAGGGGGAGAATTTGGTGGCGGATTGGCTCACCCGATACAACATAGCCCTGGGTGTGGCTCAGGGGATTTGCTATCTTCACCATGACTGTGACCCCGTAATTGTTCACCGGGATCTCAAGCCCAGTAATATATTATTGGACGGTGAAATGGAGGCCAGGGTGGCTGATTTTGGGGTGGCGAAGCTAATCGAGTGCGACGAATCCATGTCAGTGATTGCTGGGTCTTACGGTGTGGTATTAATGGAGATTCTTAGCGGAAAAAGATCGGTGGATGCTGAATTTGGAGATGGCAATAGCATTGTGGACTGGGTTAAATCTAAGGTCAAGGTAAAAGGCGGTGTTAATAATGTATTAGATAAAAATGTAGGTGCTTCTTGCACATCTGTTAGAGAAGAAATGATGTTGGTCCTAAGAATTGCATTACTTTGCACTAGTCGAAATCCAGTGGATCGGCCATCTATGAGGGATGTTGTGTCAATGTTACAAGAGGCAAAGCCCAAGAGAAAATCGCCCGAGAATGATGTTGGTGCTATGGCGGCTGTTAATGGCAGTGCTAATTGTCTTGCTCAAAAAATAGTTGTGAAATGTTAA

Network for GWHGAAZE003438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	30	75	1.70E-06
PF13855.7	LRR_8	273	331	3.40E-08
PF00069.26	Pkinase	715	889	2.10E-33

Protein Sequence

>GWHPAAZE003441
MNHHPQLHTPASTPKNTPLIRLQTLPFPLQLSSLLSLKSSLIDPHNTFHDWDSTPAFSRPGSGPIWCTWSGVKCDPTTYQITSLNLSKRNLSGTIPADIRYLWHLHHFNISGNAFDGTLQTAIFELPYLRTLDISHNYFNSTFPLGLSKLKNLTLLNAYSNSFTGPLPLDIVHLQFLEQLNLGGSYFDATIPASYGSFLRLKFLYLAGNLLTGPIPAQLGFLTQLEHLEIGYNEFTGGIPVQYGMLSNLDYFDISSANLSGDLPGELGNLTKLEILLIFKNRFSGSIPESFGQLEALKYLDASDNNLTGFIPREFSSLKELKGLNLMNNALTGEIPEGIGELPNLDTLSLWNNSLTGILPQKLGSNSNLQKVDVSSNSLAGPVPPNLCRGNKLVKLILFSNKLVGELPSSIANCTSLSRFRIQKNNFNGSIPFGFGFLPNLTFMDVSNNNFSGSIPKDFGNAAKLEYLNVSANSFNSELPGNIWSSPSLQIFSASFAKLVGKIPDFLGCRNLYRIELEGNNLSDSIPWDIDHCEKLICLNLRLNSLTGIIPWEISSLPSITDVDLSHNFLTGSIPSNFGNCSTLEAFNVSYNQLIGPVPSTGTIFSSFHPSSFMENEGLCGDVVGKPCGTNGGVAGGGTELRQQPKKTSGAIVWIMAMAFGIGLFILIAGSRCFHASYQQRFAAEGREIGPWRLTAFQRLNFTADDVLECLSMTDKIVGMGSTGTVYKAEMPGGEIIAVKKLWGKHKETIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNSECTMLLYEYMPNGSLDDLLHGKSKGENLVADWLTRYNIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIECDESMSVIAGSYGVVLMEILSGKRSVDAEFGDGNSIVDWVKSKVKVKGGVNNVLDKNVGASCTSVREEMMLVLRIALLCTSRNPVDRPSMRDVVSMLQEAKPKRKSPENDVGAMAAVNGSANCLAQKIVVKC

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.823
	SRR3591706	second leaf	7.657
	SRR3591707	mature leaf	2.141
	SRR3591708	Shoot apex	14.421
	SRR3591709	Stem	20.732
	SRR3591710	White floral bud	2.053
	SRR3591711	White flower	0.869
	SRR3591712	Green floral bud	3.806
	SRR3591713	Yellow flower	0.053
SRP173429	SRR8316895	Juvenile bud stage	5.097
	SRR8316896	Juvenile bud stage	4.161
	SRR8316897	Juvenile bud stage	2.168
	SRR8316894	Third green stage	1.829
	SRR8316900	Third green stage	2.880
	SRR8316901	Third green stage	2.781
	SRR8316898	Complete white stage	0.096
	SRR8316899	Complete white stage	2.714
	SRR8316903	Complete white stage	0.292
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.459
	SRR6706287	Light intensity 50%	3.107
	SRR6706288	Light intensity 20%	2.760
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.723
	CNS0095593	Slightly white alabastrum(diploid) 2	2.670
	CNS0095594	Slightly white alabastrum(diploid) 3	3.250
	CNS0095595	Whole white alabastrum(diploid) 2	2.118
	CNS0095596	Whole white alabastrum(diploid) 3	0.727
	CNS0095597	Whole white alabastrum(diploid) 4	0.848
	CNS0095598	Silvery flower (diploied) 1	1.963
	CNS0095599	Silvery flower (diploied) 2	2.066
	CNS0095600	Silvery flower (diploied) 3	1.102
	CNS0095601	Golden flower (diploid) 1	2.218
	CNS0095602	Golden flower (diploid) 2	1.516
	CNS0095603	Golden flower (diploid) 3	1.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.870
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.605
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.663
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.357
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.450
	CNS0095610	Silvery flower (tetraploid) 1	0.089
	CNS0095611	Silvery flower (tetraploid) 2	1.058
	CNS0095612	Silvery flower (tetraploid) 3	0.566
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.019
CRA001975	CRR073297	Stem 1	6.935
	CRR073298	Stem 2	5.918
	CRR073299	Stem 3	13.486
	CRR073300	Leaf 1	3.521
	CRR073301	Leaf 2	3.374
	CRR073302	Leaf 3	3.436
	CRR073303	Juvenile bud 1	2.123
	CRR073304	Juvenile bud 2	0.687
	CRR073305	Juvenile bud 3	4.035
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.016
	CRR073308	Third green 3	0.070
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.017
	CRR073311	Second white 3	0.016
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.024
	CRR073315	Gold flowering 1	1.254
	CRR073316	Gold flowering 2	2.273
	CRR073317	Gold flowering 3	1.987
	CRR073318	Tawny withering 1	36.921
	CRR073319	Tawny withering 2	12.733
	CRR073320	Tawny withering 3	47.598