Gene detail

Detail information of GWHGAAZE003440

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05344.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VYT5\|FB254_ARATH	0	F-box protein At5g07670
trEMBL	tr\|A0A068UAW9\|A0A068UAW9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05344.1}
TAIR10	AT5G07670.1	2E-142	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97879532	97882227	+
GWHAAZE00000001	mRNA	97879532	97882227	+
GWHAAZE00000001	exon	97879532	97880766	+
GWHAAZE00000001	exon	97881644	97882227	+
GWHAAZE00000001	CDS	97879532	97880766	+
GWHAAZE00000001	CDS	97881644	97881911	+
GWHAAZE00000001	three_prime_UTR	97881912	97882227	+

Transcript Sequence
>GWHTAAZE003446 ATGTCGTGTTCACTTGAGAAAGCAAACCCTAACCCTAACCCTAACCCTAACCCTCCATTGAAGAAGACACCTTCTCGTCGTTGGTCTGACATCTGGTTCAAGAACAACAAGGAAGCTTTCAACCATGCTGTCTTAGCTATGCACTTCCAATCTCTCACCACCAAACCCCCACACAACAATAATCCATCACTCTCACCTCAATCCAATAATAATAATAAAACCCTTATCTTCGATCGCCCAAAACTCGTTGGAGATCGAACTTCACTCCTCTCCGACGAGCTGCTTCTTCAAATCCTCTCCAAACTTCCCCAATCGCAAAGGAATTCCAATTCCCTCGTCTCCAAACGGTGGTTGAATCTTCAGGGCCGTCTCGTAAGGTCACTCAAGCTTCTCGATTGGAACTTCCTCATTTCGGGTCGATTGTTTTCCCGATTCCCAAATCTTATTCGTGTTGATCTTGTTCACGGATGTGTTGTTTCCCCCCAAAATTCGGGTATTTCTTTTACTCATAATAAGCTTGTGTCTTTTCACGTTGATTCCTCTGAAGGGTTTGTTTATGAAAAACATGTTCTATCAGTTGATGAGGTGGATTTGGGTCTTAGAATTTTAGCTAGTGGCTATCCTAATTTGCGAAGACTTGTGGTTATTGGTGCTAGTGAAATGGGGTTATTGAGCATTGCTGAGGATTGTCCTACATTGCAGGACTTGGAGTTGCATAAGTGTAATGATCAAGTTCTGCGCGGAATTGCTGCCTTTCAGAATTTACAGATTTTGAAACTCATTGGAAATATTGATGGGTTTTATGGTTCTTTGGTTTCGGATATTGGGTTGACTATTCTAGCACAAGGTTGTAAGAGGTTAGTGAAGCTCGAGCTGAGTGGATGTCAGGGTAGCTATGATGGGATTAAAGCTATTGGGCAATGTTGTCAAATGCTCGAAGAGTTTACCATCTGTGATCATAGGATGGATGACGGGTGGTTGTCAGGTCTTTCCTACTGTGAAAATTTGAAAACTTTGAGGTTTATATCTTGTAAAAGTGTTGATCGCGATCCAGGGCCTGACGAGTATTTGGGTATGTGCCCCACACTTGGACGATTGCATTTTGACAGGTGCCAACTACGGGATAAGAGGTGTATGAGAGCATTGTTTCTAGTATGTCAAGCTGCAGGGGAGATTGTTTTTGAGAATTGTTGGGGCTTGGATGATGAAATTTTCAGCACTGCAAGTATCTGCAGGAGGGTAAGGTTGCTATCTCTAGAAGGCTGCTCACTGCTAACAACACAAGGTCTGGAGTTGGTGATTCTTTCATGGAAGATGCTTGAAAGCTTGGGAGTGCTATCATGTAACAATATAAAGATTAGCGAAGTCACTCCTGCCCTTTCTGCCCTGTTTTCTGTTCTTAAAGAGTTGAAATGGAGGCCAGAGACCAAATCTCTATTGTCAGCAAGTCTTGTTGGGACAGGCATGGGAAAAAGAGGAGCCAAATTTTTCAAAAAGATGTAAGAGTCAAATTTCTCAAGTTTTGGACTGGGGTTTTTAATTATTGGACACAGCGACTCACTTGGCAGTGCAGAGACTGAACTGTGCCATTGCTCTTTAATTAGTTCTCTCACACATTTTGGAGGGTTAACATGTTTGTTGACCGATGATAATTGGTCTTTCGAAGCCAAAAATGAAAGGGGTATTGATAATTTTCGTACACATTTTTCATGATATTGTGTTGTAATTCTCTGTAATCATATTCTAGATGGTTAAGATGTAGTTCAACAGATGAAATTTGATATTTTATTGTACAAGGGGACACAATAGTACGAGTTTG

Network for GWHGAAZE003440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.882
	SRR3591706	second leaf	2.161
	SRR3591707	mature leaf	3.226
	SRR3591708	Shoot apex	8.848
	SRR3591709	Stem	3.401
	SRR3591710	White floral bud	2.975
	SRR3591711	White flower	2.110
	SRR3591712	Green floral bud	2.816
	SRR3591713	Yellow flower	1.725
SRP173429	SRR8316895	Juvenile bud stage	2.001
	SRR8316896	Juvenile bud stage	3.833
	SRR8316897	Juvenile bud stage	1.553
	SRR8316894	Third green stage	1.220
	SRR8316900	Third green stage	2.811
	SRR8316901	Third green stage	1.807
	SRR8316898	Complete white stage	0.626
	SRR8316899	Complete white stage	2.501
	SRR8316903	Complete white stage	1.356
	SRR8316902	Silver flowering stage	0.744
	SRR8316904	Silver flowering stage	0.941
	SRR8316905	Silver flowering stage	0.491
	SRR8316906	Gold flowering stage	2.198
	SRR8316907	Gold flowering stage	1.920
	SRR8316908	Gold flowering stage	1.542
SRP132670	SRR6706286	Control	2.666
	SRR6706287	Light intensity 50%	2.218
	SRR6706288	Light intensity 20%	2.348
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.840
	CNS0095593	Slightly white alabastrum(diploid) 2	1.132
	CNS0095594	Slightly white alabastrum(diploid) 3	1.768
	CNS0095595	Whole white alabastrum(diploid) 2	1.209
	CNS0095596	Whole white alabastrum(diploid) 3	1.223
	CNS0095597	Whole white alabastrum(diploid) 4	1.672
	CNS0095598	Silvery flower (diploied) 1	1.824
	CNS0095599	Silvery flower (diploied) 2	1.625
	CNS0095600	Silvery flower (diploied) 3	4.843
	CNS0095601	Golden flower (diploid) 1	1.883
	CNS0095602	Golden flower (diploid) 2	2.647
	CNS0095603	Golden flower (diploid) 3	3.441
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.551
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.943
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.767
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.449
	CNS0095610	Silvery flower (tetraploid) 1	2.374
	CNS0095611	Silvery flower (tetraploid) 2	3.383
	CNS0095612	Silvery flower (tetraploid) 3	1.814
	CNS0095613	Golden flower (tetraploid) 1	2.860
	CNS0095614	Golden flower (tetraploid) 2	4.044
	CNS0095615	Golden flower (tetraploid) 3	2.595
CRA001975	CRR073297	Stem 1	3.678
	CRR073298	Stem 2	4.339
	CRR073299	Stem 3	3.643
	CRR073300	Leaf 1	2.393
	CRR073301	Leaf 2	2.513
	CRR073302	Leaf 3	1.664
	CRR073303	Juvenile bud 1	1.618
	CRR073304	Juvenile bud 2	1.363
	CRR073305	Juvenile bud 3	2.466
	CRR073306	Third green 1	0.707
	CRR073307	Third green 2	0.653
	CRR073308	Third green 3	0.968
	CRR073309	Second white 1	0.625
	CRR073310	Second white 2	0.530
	CRR073311	Second white 3	0.530
	CRR073312	Silver flowering 1	0.486
	CRR073313	Silver flowering 2	0.834
	CRR073314	Silver flowering 3	0.484
	CRR073315	Gold flowering 1	0.330
	CRR073316	Gold flowering 2	1.098
	CRR073317	Gold flowering 3	0.881
	CRR073318	Tawny withering 1	4.057
	CRR073319	Tawny withering 2	3.915
	CRR073320	Tawny withering 3	2.905