Gene detail

Detail information of GWHGAAZE003442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269854.1	0	PREDICTED: structural maintenance of chromosomes protein 2-1 [Vitis vinifera]
COG	NP_126050.1	5E-86	chromosome segregation protein smc1
Swissprot	tr\|Q9C5Y4\|SMC21_ARATH	0	Structural maintenance of chromosomes protein 2-1
trEMBL	tr\|F6HAI6\|F6HAI6_VITVI	0	Structural maintenance of chromosomes protein {ECO:0000256\|PIRNR:PIRNR005719}
TAIR10	AT5G62410.1	0	structural maintenance of chromosomes 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97898351	97906505	-
GWHAAZE00000001	mRNA	97898351	97906505	-
GWHAAZE00000001	exon	97898351	97898470	-
GWHAAZE00000001	exon	97898774	97898848	-
GWHAAZE00000001	exon	97899240	97899465	-
GWHAAZE00000001	exon	97899608	97899696	-
GWHAAZE00000001	exon	97899774	97899867	-
GWHAAZE00000001	exon	97900005	97900189	-
GWHAAZE00000001	exon	97900277	97900444	-
GWHAAZE00000001	exon	97900587	97900727	-
GWHAAZE00000001	exon	97901303	97901521	-
GWHAAZE00000001	exon	97901613	97901729	-
GWHAAZE00000001	exon	97902066	97902162	-
GWHAAZE00000001	exon	97902359	97902450	-
GWHAAZE00000001	exon	97902535	97902597	-
GWHAAZE00000001	exon	97902873	97902932	-
GWHAAZE00000001	exon	97903020	97903184	-
GWHAAZE00000001	exon	97903294	97903479	-
GWHAAZE00000001	exon	97903600	97903890	-
GWHAAZE00000001	exon	97904005	97904148	-
GWHAAZE00000001	exon	97904280	97904960	-
GWHAAZE00000001	exon	97906188	97906505	-
GWHAAZE00000001	CDS	97906188	97906505	-
GWHAAZE00000001	CDS	97904280	97904960	-
GWHAAZE00000001	CDS	97904005	97904148	-
GWHAAZE00000001	CDS	97903600	97903890	-
GWHAAZE00000001	CDS	97903294	97903479	-
GWHAAZE00000001	CDS	97903020	97903184	-
GWHAAZE00000001	CDS	97902873	97902932	-
GWHAAZE00000001	CDS	97902535	97902597	-
GWHAAZE00000001	CDS	97902359	97902450	-
GWHAAZE00000001	CDS	97902066	97902162	-
GWHAAZE00000001	CDS	97901613	97901729	-
GWHAAZE00000001	CDS	97901303	97901521	-
GWHAAZE00000001	CDS	97900587	97900727	-
GWHAAZE00000001	CDS	97900277	97900444	-
GWHAAZE00000001	CDS	97900005	97900189	-
GWHAAZE00000001	CDS	97899774	97899867	-
GWHAAZE00000001	CDS	97899608	97899696	-
GWHAAZE00000001	CDS	97899240	97899465	-
GWHAAZE00000001	CDS	97898774	97898848	-
GWHAAZE00000001	CDS	97898351	97898470	-

Transcript Sequence
>GWHTAAZE003448 ATGTATATCAAAGAGATATGCTTGGAGGGATTCAAGTCATACGCGACGAGGACGGTCGTCCCGGGGTTTGATCCTTACTTCAATGCCATCACTGGCCTGAACGGGTCGGGTAAATCGAACATTCTCGATTCGATTTGCTTCGTTTTGGGTATTACCAACTTGCAGCAGGTTCGGGCCTCAAATCTGCAGGAGCTAGTGTACAAGCAGGGCCAAGCTGGGATTACAAAGGCAACGGTCTCAGTTGTGTTTGATAATTCAGATAGGAATAGAAGCCCTCTCGGATACGAAGATTGCCCCGAGATTACAGTTACTCGTCAGATTGTAGTTGGTGGGAGGAACAAATATTTGATCAATGGTCACCTGGCTCAGCCTAGTCGAGTACAAAATCTTTTTCACTCGGTGCAGCTAAATGTGAACAATCCACATTTTCTTATAATGCAAGGGCGCATCACCAAGGTACTTAACATGAAACCCCCTGAAATATTGTCTATGCTTGAAGAGGCTGCTGGGACAAGAATGTACGAAACAAAGAAAGAGGCTGCCCTTAAAACCCTTGAGAAAAAGCAGAGCAAGGTAGATGAAATTGATAAGCTTCTTGATCAAGAAATACTACCTGCATTGGAGAAGTTAAGGAAAGAGCGGATGCAATACATGCAATGGGCTAATGGCAACGCAGAATTAGACCGGCTTAAAAGGTTTTGCATTGCTTATGAATATGTTCAAGCTGAGACTATTAAAGACAATGCAGTTCATGGGGTGGAAGAAATAAAAGCCAAGATTTCTGAGATTGATGATAGTTCAAATAGGATGCATATAGAAATACAGGACAAGCAGACAAAAGTAACAGAATTGACTGCTGAAAAAGAAGCAAGCATGGGCGGGGAGGTAAAATTATTGTCAGAGAAAGTTGACATTCTTTCTCGTGATCTTGTCAAGGAAACTTCTGTACTGAAAAATCAAGAAGAAAATCTTATGACCGAGAAAGCGAATGCAGCAAAGATCGAGAAAAGTATCGAAGAAATAAAGCAGTCAGCAGAAGAGAGAGCCTCAGCTGTAAAAAATGCCGAAGATGGAGCAGCTGATCTCAGAAAAAGAGCAGAGGACCTTTCTAAGAGTTTGGAAGAGTATGAGAAAGAGTACCAGGGTGTGGTAGCTGGTAAGAGCAGTGGAAACGAGGAAAAATGCCTTGAAGACCAACTAGGTGATGCTAAAGTAGCAGTTGGGACAGCGGAAACAGAACTGAAACAGTTGAAAACAAAGATAAACCATTGCGAAAAAGAGCTGAAAGAGAAAAAAGGCCAGCTGTTGTCAAAGCAAGAAGAAGCTGTTGCTGTTGAGTGTGAACTTAGTGCCAGGAAAAAAGATGTGGAAAATGTTAACCGGGCTTTGGAATCTCTCGCATATGAAGAAGGGGAGATGGAATCATTACAAAAGGATCGTGTAGTTGAGTCAGAGATGGTGCAGAAGTTAAAAGATGAAATTCGTATGCTTTCCTCTAGATTGGGAAATGTTGAATTCACATACCGTGACCCCGTGAAGAATTTTAATAGGTCAAGCGTGAAAGGTGTGGTTGCAAAACTCATTAAAGTGAAGGATAGCTCGACAATGACTGCCTTAGAGGTTGCTGCTGGTGGAAAGCTGTTCAACATTGTGGTAGACACAGAAAATACTGGAAAGCAACTTCTTCAAAATGGGGATCTTCGAAGAAGAGTGACGATTATCCCTCTAAACAAGATCCAAAGCCACCGTGTGCCACCTAGAGTTCAAAATGCTGCTGTTAGATTAGTTGGTAAGGGGAATGCTGAAGTGGCACTTTCTTTGGTCGGATACGATGAAGAACTGAAGAATGCAATGGAGTACATCTTTGGCTCAACCTTTGTTTGCAGAACCATTGATGCTGCACGGGAGGTTGCTTTCAATAGGGAAATCGGCACCCCAAGTGTAACTCTTGAAGGTGATATATTTCAGCCAAGTGGTCTTCTGACTGGTGGTAGTCGCAGGGGTGGTGGTGATCTATTGAGGCAACTACATGCTTTGGCAGAGGCTGAATCTAAGCTCTCTTTTCATGAGAAGTGCCTGTCTGAAATTGAGGCTAAGATTAGTGCTCTCCTTCCCCTTCAAAGAAAGTTCAAAGAGCTGAAGGTGCAGTTGGAACTTAAGTCGTATGACCTTTCATTATTTCAGAACAGAGCCGAGCAAAATGAGCATCATAAGCTCAGTGAACTAGTGAAGAAGATTGAGGGGGAGCTTGGAGAAGCGAAGTCTGCTGTTAATGAAAAGGAGCTTATTTATGAAAACTGTGTAACTAAAGTGTCAGTCCTTGAAAAGTCAATTCATGAACATGCCCATAATAGGGAGGGCAGGCTCAAAGATTTAGAGAAGAAGATTAAGTCTGTAAAGGCTCAGATGCAATCAGCCTCGAAGGACCTCAAGGGGCATGAAAATGAAAGAGAGAAGCTTATTATGGAAATGGAGGCAGTTAAACAGGAACGGGGTTCTTTGGAGAGTCAGTTAGCTTCCTTGAAGAAGCAGATTAGTAGTCTTGCTCTAGAAGTAGATAAACACAAGACCAAGGTTGCTTCCTTAAGAAATGATCATCATCAGGCACAATCTGAACTCAACATGGCCCGCACAAAGCTTCAAGAGTGTGACTCACAAATAAGCTGTATTCTTAAGGAGCAGCAGAAGCTTCAACATAAAATTAGTGAACAAAATCTGGAGAGAAAGAAGATGGAAAATGAGGTGAAACGAATGGAGATGGAACAAAAAGATTGTTCTTTGAGGGTTGACAAATTAATCGAGAAGCATGCATGGATTACTTCTGAGAAGCAGCTTTTTGGAAAAAGTGGGACTGATTATGATTTTGTATCCCGTGATCCTCGTAAGTCAAAGGATGAATATGAAAAGCTTCAGGCTGAACAGTCAGGCCTGGAGAAAAGGGTGAACAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGACTTGATATCCAAGAAAAACATTATTGAGAATGACAAGTCAAAAATCAAGATGGTGATTGAAGAACTTGATGAGAAGAAGAAGGAAACTCTTAAAGTTACCTGGGTTAAAGTTAACAATGACTTTGGATCTATATTTTCTACTTTACTACCTGGCACAATGGCAAAGCTAGAACCACCAGAGGGAGGCAGCTTCTTAGACGGACTTGAAGTTCGGGTTGCATTTGGAGGTGTTTGGAAACAGTCCTTGTCGGAACTTAGTGGAGGGCAAAGATCTCTACTTGCACTTTCTCTAATTTTGGCATTGCTACTTTTCAAACCAGCTCCACTTTATATACTGGATGAGGTTGATGCAGCTCTAGATCTAAGTCACACACAGAACATTGGAAGGATGATCAAAGCTCACTTTCCACATTCCCAGTTTATTGTTGTTTCATTGAAAGAGGGCATGTTCAATAATGCTAATGTTCTTTTCCGGACCAAATTTGTGGATGGTGTCTCCACTGTGCAGAGAACTGTTGCAGCAAAGCAAAACAAGTGA

Network for GWHGAAZE003442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	2	1161	1.30E-59
PF06470.14	SMC_hinge	518	638	2.50E-24

Protein Sequence

>GWHPAAZE003445
MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNSDRNRSPLGYEDCPEITVTRQIVVGGRNKYLINGHLAQPSRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEIDKLLDQEILPALEKLRKERMQYMQWANGNAELDRLKRFCIAYEYVQAETIKDNAVHGVEEIKAKISEIDDSSNRMHIEIQDKQTKVTELTAEKEASMGGEVKLLSEKVDILSRDLVKETSVLKNQEENLMTEKANAAKIEKSIEEIKQSAEERASAVKNAEDGAADLRKRAEDLSKSLEEYEKEYQGVVAGKSSGNEEKCLEDQLGDAKVAVGTAETELKQLKTKINHCEKELKEKKGQLLSKQEEAVAVECELSARKKDVENVNRALESLAYEEGEMESLQKDRVVESEMVQKLKDEIRMLSSRLGNVEFTYRDPVKNFNRSSVKGVVAKLIKVKDSSTMTALEVAAGGKLFNIVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSHRVPPRVQNAAVRLVGKGNAEVALSLVGYDEELKNAMEYIFGSTFVCRTIDAAREVAFNREIGTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHALAEAESKLSFHEKCLSEIEAKISALLPLQRKFKELKVQLELKSYDLSLFQNRAEQNEHHKLSELVKKIEGELGEAKSAVNEKELIYENCVTKVSVLEKSIHEHAHNREGRLKDLEKKIKSVKAQMQSASKDLKGHENEREKLIMEMEAVKQERGSLESQLASLKKQISSLALEVDKHKTKVASLRNDHHQAQSELNMARTKLQECDSQISCILKEQQKLQHKISEQNLERKKMENEVKRMEMEQKDCSLRVDKLIEKHAWITSEKQLFGKSGTDYDFVSRDPRKSKDEYEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLISKKNIIENDKSKIKMVIEELDEKKKETLKVTWVKVNNDFGSIFSTLLPGTMAKLEPPEGGSFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQNK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06674	SMC2	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.702
	SRR3591706	second leaf	3.014
	SRR3591707	mature leaf	1.452
	SRR3591708	Shoot apex	34.161
	SRR3591709	Stem	6.169
	SRR3591710	White floral bud	3.387
	SRR3591711	White flower	4.083
	SRR3591712	Green floral bud	2.908
	SRR3591713	Yellow flower	2.860
SRP173429	SRR8316895	Juvenile bud stage	6.100
	SRR8316896	Juvenile bud stage	6.653
	SRR8316897	Juvenile bud stage	3.552
	SRR8316894	Third green stage	2.603
	SRR8316900	Third green stage	4.354
	SRR8316901	Third green stage	3.783
	SRR8316898	Complete white stage	0.713
	SRR8316899	Complete white stage	3.264
	SRR8316903	Complete white stage	2.052
	SRR8316902	Silver flowering stage	1.447
	SRR8316904	Silver flowering stage	2.605
	SRR8316905	Silver flowering stage	1.322
	SRR8316906	Gold flowering stage	3.224
	SRR8316907	Gold flowering stage	4.331
	SRR8316908	Gold flowering stage	2.583
SRP132670	SRR6706286	Control	2.046
	SRR6706287	Light intensity 50%	2.898
	SRR6706288	Light intensity 20%	3.410
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.273
	CNS0095593	Slightly white alabastrum(diploid) 2	4.602
	CNS0095594	Slightly white alabastrum(diploid) 3	3.443
	CNS0095595	Whole white alabastrum(diploid) 2	3.037
	CNS0095596	Whole white alabastrum(diploid) 3	2.003
	CNS0095597	Whole white alabastrum(diploid) 4	2.479
	CNS0095598	Silvery flower (diploied) 1	4.393
	CNS0095599	Silvery flower (diploied) 2	4.882
	CNS0095600	Silvery flower (diploied) 3	3.801
	CNS0095601	Golden flower (diploid) 1	2.807
	CNS0095602	Golden flower (diploid) 2	2.507
	CNS0095603	Golden flower (diploid) 3	2.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.305
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.257
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.275
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.619
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.251
	CNS0095610	Silvery flower (tetraploid) 1	3.844
	CNS0095611	Silvery flower (tetraploid) 2	2.832
	CNS0095612	Silvery flower (tetraploid) 3	8.599
	CNS0095613	Golden flower (tetraploid) 1	1.414
	CNS0095614	Golden flower (tetraploid) 2	1.491
	CNS0095615	Golden flower (tetraploid) 3	0.962
CRA001975	CRR073297	Stem 1	6.283
	CRR073298	Stem 2	5.396
	CRR073299	Stem 3	5.831
	CRR073300	Leaf 1	3.565
	CRR073301	Leaf 2	2.071
	CRR073302	Leaf 3	2.226
	CRR073303	Juvenile bud 1	2.642
	CRR073304	Juvenile bud 2	0.910
	CRR073305	Juvenile bud 3	3.182
	CRR073306	Third green 1	1.078
	CRR073307	Third green 2	1.382
	CRR073308	Third green 3	1.486
	CRR073309	Second white 1	1.464
	CRR073310	Second white 2	2.754
	CRR073311	Second white 3	4.103
	CRR073312	Silver flowering 1	3.000
	CRR073313	Silver flowering 2	2.907
	CRR073314	Silver flowering 3	2.825
	CRR073315	Gold flowering 1	0.954
	CRR073316	Gold flowering 2	1.630
	CRR073317	Gold flowering 3	0.780
	CRR073318	Tawny withering 1	3.924
	CRR073319	Tawny withering 2	5.217
	CRR073320	Tawny withering 3	4.945