Gene detail

Detail information of GWHGAAZE003451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAA53098.1	0	beta-fructofuranosidase [Daucus carota]
COG	YP_001792320.1	5E-42	Beta-fructofuranosidase
Swissprot	tr\|P80065\|INVB_DAUCA	0	Beta-fructofuranosidase, soluble isoenzyme I (Precursor)
trEMBL	tr\|K0GF22\|K0GF22_9ERIC	0	Soluble acid invertase 2 {ECO:0000313\|EMBL:AFU25742.1}
TAIR10	AT1G62660.1	1E-171	Glycosyl hydrolases family 32 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98094558	98101405	+
GWHAAZE00000001	mRNA	98094558	98101405	+
GWHAAZE00000001	exon	98094558	98094969	+
GWHAAZE00000001	exon	98098879	98099437	+
GWHAAZE00000001	exon	98099533	98099734	+
GWHAAZE00000001	exon	98100605	98100840	+
GWHAAZE00000001	exon	98100954	98101041	+
GWHAAZE00000001	exon	98101196	98101405	+
GWHAAZE00000001	CDS	98094558	98094969	+
GWHAAZE00000001	CDS	98098879	98099437	+
GWHAAZE00000001	CDS	98099533	98099734	+
GWHAAZE00000001	CDS	98100605	98100840	+
GWHAAZE00000001	CDS	98100954	98101041	+
GWHAAZE00000001	CDS	98101196	98101405	+

Transcript Sequence
>GWHTAAZE003457 ATGGGCAGTCCTATCCCTTCCAGTACTCTTCCCCCTCAAGACTACGATCTTGAACAACATTCCAACAACACTACTCCCCTTCTCGATAATCCCGCCCCACCCGCCGCTCGCCATCGCCCTCTTAAGGTTTTCTCCGCCATCTTCCTCTCCCTACTCTTTCTCTCTTCTCTGATTCTTCTTATCTACAACAGACAATCCCCTCAACCACTTCCCAAAGATACCCGTGATAACGGCAACACCCAAAAACCCTCGTCTTTGATTCCGTCGTCAAGAGGGCCCCAACAGGGGGTGTCGGAGAAAACTTTCCGCCAGTTTTCAGATATTTCCGTCAAGAATTACCCATGGACCAATGCTATGCTGTCTTGGCAGAGAACATCTTACCATTTTCAACCCCAAAAAAACTGGATGAATGGTCCATTGTTCCACATGGGTTGGTATCATCTGTTCTACCAATACAACCCAGATGCAGCCGTATGGGGCAACATCACGTGGGGCCATGCCGTCTCAAAGGACCTCATCACCTGGCTCTACCTTCCTTTTGCTATGGTCCCCGATCATTGGTATGATGTCAACGGCGTCTGGACTGGCTCCGCCACCCTCCTCCCCGACGGTCGCATCGTCATGCTCTACACCGGGGATACTGTTGATGCCGTGCAGGTCCAAAACCTTGCATACCCCGCCAACCTATCTGATCCGTTCCTCCTCGACTGGGTCAAGTACCCTGATAACCCCGTAATGGTCCCCCCACCAGGCATTAATATTTCAGACTTCAGGGACCCCACTACCGCCTGGGTTGGACCCGATGGAAAATGGCGGGTTGCTATCGGATCCAAGGTTAATAAAACGGGTATCACACTTGTGTATCAAACCACCAACTTTACAAGCTATGAATTATTGGAGGAACCGCTTCATGCGGTTCCGGGGACCGGCATGTGGGAGTGTGTGGATTTTTACCCGGTTTCAGTGAGCGGGACCTACGACCCGATTGAGGACAAGTGGACTCCGGACGACCCGGCTTTCGATGTGGGCATCGGGTTGCGGTTGGATTATGGGAAATTCTATGCGTCGAAGACATTTTATGACCAGAACAAAGAGAGGAGGGTTCTGTGGGGTTGGATTGGAGAAACTGATAGTGAAGAAACTGATCTTTTGAAGGGCTGGGCATCTGTTCAGTTGGACATAACTGCCACATTTGAAGTAGACCAAGCGTCTTTAGAGGCAGTAGTTGAAGCCGATGTCGGTTACAATTGCACTACAAGCGGTGGTGCTGCCAAAAGAGGCTTTTTGGGACCATTTGGGCTTCTAGTTCTTGCTGATCAAAAGCGGTCCGAACAAACACCTGTTTATTTCTACATTGCCAAAGGCACCGATGGCACTTCCCATACATACTTTTGTTCTGATGAATCAAGGTCATCCAAGGCTGCAGATGTTAGCAAACTGGTTTATGGAAGCAAAGTTCCTGTCCTTGATGGAGAGAAGTTCTCCATGAGATTATTGGTGGATCATTCCATAGTGGAGAGTTTTGCTCAAGGAGGAAGGACGGTTATAACATCGAGAGTGTATCCAACAAGAGCAATAGACGGAGCAGCGCGCTTATTTTTGTTCAACAATGCGACTGGGGTGAGCGTCACTGCATCTGTAAAGGCATGGCAAATAGCTTCAGCAAACCATCATCCTTTTCCCTTTGAAACAGCTGTTGTAATTTAA

Network for GWHGAAZE003451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11837.9	DUF3357	27	120	1.30E-17
PF00251.21	Glyco_hydro_32N	128	323	3.90E-68
PF08244.13	Glyco_hydro_32C	387	551	3.20E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01193	INV, sacA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004564	molecular_function	beta-fructofuranosidase activity
GO:0004575	molecular_function	sucrose alpha-glucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	148.073
	SRR3591706	second leaf	27.159
	SRR3591707	mature leaf	24.649
	SRR3591708	Shoot apex	49.670
	SRR3591709	Stem	25.031
	SRR3591710	White floral bud	201.000
	SRR3591711	White flower	122.097
	SRR3591712	Green floral bud	106.904
	SRR3591713	Yellow flower	270.055
SRP173429	SRR8316895	Juvenile bud stage	57.800
	SRR8316896	Juvenile bud stage	82.521
	SRR8316897	Juvenile bud stage	54.243
	SRR8316894	Third green stage	39.404
	SRR8316900	Third green stage	246.076
	SRR8316901	Third green stage	277.407
	SRR8316898	Complete white stage	105.267
	SRR8316899	Complete white stage	297.273
	SRR8316903	Complete white stage	265.998
	SRR8316902	Silver flowering stage	73.402
	SRR8316904	Silver flowering stage	159.809
	SRR8316905	Silver flowering stage	68.898
	SRR8316906	Gold flowering stage	170.378
	SRR8316907	Gold flowering stage	166.423
	SRR8316908	Gold flowering stage	148.233
SRP132670	SRR6706286	Control	271.492
	SRR6706287	Light intensity 50%	254.473
	SRR6706288	Light intensity 20%	247.643
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.108
	CNS0095593	Slightly white alabastrum(diploid) 2	61.667
	CNS0095594	Slightly white alabastrum(diploid) 3	49.383
	CNS0095595	Whole white alabastrum(diploid) 2	58.910
	CNS0095596	Whole white alabastrum(diploid) 3	77.752
	CNS0095597	Whole white alabastrum(diploid) 4	62.085
	CNS0095598	Silvery flower (diploied) 1	41.804
	CNS0095599	Silvery flower (diploied) 2	61.648
	CNS0095600	Silvery flower (diploied) 3	144.403
	CNS0095601	Golden flower (diploid) 1	53.721
	CNS0095602	Golden flower (diploid) 2	177.264
	CNS0095603	Golden flower (diploid) 3	170.311
	CNS0095604	Slightly white alabastrum(tetraploid) 1	77.832
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.013
	CNS0095606	Slightly white alabastrum(tetraploid) 3	190.713
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.528
	CNS0095608	Whole white alabastrum(tetraploid) 2	58.672
	CNS0095609	Whole white alabastrum(tetraploid) 3	211.293
	CNS0095610	Silvery flower (tetraploid) 1	250.086
	CNS0095611	Silvery flower (tetraploid) 2	163.292
	CNS0095612	Silvery flower (tetraploid) 3	110.236
	CNS0095613	Golden flower (tetraploid) 1	167.732
	CNS0095614	Golden flower (tetraploid) 2	223.464
	CNS0095615	Golden flower (tetraploid) 3	598.168
CRA001975	CRR073297	Stem 1	146.495
	CRR073298	Stem 2	159.351
	CRR073299	Stem 3	131.440
	CRR073300	Leaf 1	350.063
	CRR073301	Leaf 2	252.845
	CRR073302	Leaf 3	249.985
	CRR073303	Juvenile bud 1	221.970
	CRR073304	Juvenile bud 2	477.588
	CRR073305	Juvenile bud 3	271.261
	CRR073306	Third green 1	150.852
	CRR073307	Third green 2	169.311
	CRR073308	Third green 3	210.905
	CRR073309	Second white 1	19.220
	CRR073310	Second white 2	29.190
	CRR073311	Second white 3	28.058
	CRR073312	Silver flowering 1	61.438
	CRR073313	Silver flowering 2	68.694
	CRR073314	Silver flowering 3	68.999
	CRR073315	Gold flowering 1	14.836
	CRR073316	Gold flowering 2	16.162
	CRR073317	Gold flowering 3	20.871
	CRR073318	Tawny withering 1	6.808
	CRR073319	Tawny withering 2	4.399
	CRR073320	Tawny withering 3	6.527