Gene detail

Detail information of GWHGAAZE003458

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009592766.1	0	PREDICTED: endoglucanase 8-like [Nicotiana tomentosiformis]
COG	YP_002464713.1	8E-85	glycoside hydrolase family protein
Swissprot	tr\|Q69NF5\|GUN23_ORYSJ	0	Endoglucanase 23 (Precursor)
trEMBL	tr\|M5XMI2\|M5XMI2_PRUPE	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G23210.1	9E-154	glycosyl hydrolase 9B6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98232808	98235256	+
GWHAAZE00000001	mRNA	98232808	98235256	+
GWHAAZE00000001	exon	98232808	98232996	+
GWHAAZE00000001	exon	98233130	98233540	+
GWHAAZE00000001	exon	98233894	98233989	+
GWHAAZE00000001	exon	98234172	98234342	+
GWHAAZE00000001	exon	98234426	98234534	+
GWHAAZE00000001	exon	98234638	98234801	+
GWHAAZE00000001	exon	98234933	98235256	+
GWHAAZE00000001	CDS	98232808	98232996	+
GWHAAZE00000001	CDS	98233130	98233540	+
GWHAAZE00000001	CDS	98233894	98233989	+
GWHAAZE00000001	CDS	98234172	98234342	+
GWHAAZE00000001	CDS	98234426	98234534	+
GWHAAZE00000001	CDS	98234638	98234801	+
GWHAAZE00000001	CDS	98234933	98235256	+

Transcript Sequence
>GWHTAAZE003464 ATGTTAATATTAGGATGGATGACTATGGTGCTAGTCGCAACGGCGGAGAAAGTGGCGCCACCCAAATACGGGGAGGCGTTGAGAAAGAGCATTTTGTTCTTTGAAGGTCAAAGGTCAGGAAAGTTACCAACTAACCAAAGATTGACTTGGAGGAAGGACTCTGCTCTTACCGATGGCTCTGACATGGGCGTGGATTTGGTAGGAGGTTACTATGACGCGGGGGACAACGTAAAATTTAACTTTCCAATGGCATTCTCAACAACAATGTTAGCTTGGAGCGTACTAGAATTTGGCAAATCAATGACCACCTCGGACATGAGCCACGCGCTCGACGCTATCAAATGGTCAACCGACTACTTTCTGAAAGCCACAAGTCAACCTGATGTCGTGTTTGCCCAAGTGGGTGAACCAAATGGTGACCACAATTGCTGGCAAAGGCCCGAAGATATGGACACCCCTAGAACTACATTTGCTGTGACTAAGGATTCCCCTGGCTCTGAAGTTTCGGCCGAGATTGCAGCTGCCTTAGCTGCTTCTTCCATGGTGTTTAAGCACGTTGATCCTGCATATTCCAAATTGCTTCGCCAAAGAGCCTTCAAGGTTTTTGAATTTGCAGATAGGCATCAGGGATCTTACAATGACGGTACAATGGGAAAGTGGGTTTGCCCATTTTATTGCGATTATAGCGGCTACCAGGATGAATTGATATGGGGAGCAGCATGGCTATACAAAGCCACCGGATCGAGTCTTTACTGGAATTATGTCAACAACAACTTTAATAACTTGGTAGGTCCCAACAATGCAGGTATCTTCGCTGAATTTGGCTGGGATACTAAGCACGCTGGGATTAACGTTCTTGTTTCAAAGTTCATACTAAAAATGAACTTGAAACCTAGTCCATTTGTTCCCTACGCGGACTACTTTGTCTGTAACATGTTGCCCGAATCATCAGACAATACCATCGAATACTCCCCAGGTGGACTTATATTTAGACCCGGGGGTTGTAATATGCAACATACGACGGCCTTATCCTTTCTTCTCCTTACCTACTCTCGCTATTTGAAAAGTGCTAAGAGGGTGATACACTGTGGTAACATTGTTGTCACTCCATCCCGCCTTGTACATTTTGCTAGAGCACAGGTTGATTATATACTGGGGAAGAATCCAATGAATATATCGTATATGGTGGGATTTGGGAAAAAGTATCCAAACAGGATACATCATCGAGCCTCTTCATTGCCTTCAATTGATCAGCATCCACAACATATCCAGTGTAAAGATGGGACACCTTATTTCATAAGCAATGATAGTAATCCCAACAAGCTAATAGGAGCAGTGGTTGGAGGTCCAGATATCAAGGATTCGTTTGCTGATTATAGACAAGATGCTACGCATTCCGAGCCAACTACATACGTAAATGCACCTCTAGTTGGCCTTTTAGCTTACTTCAAAGGAAATCCGTAG

Network for GWHGAAZE003458

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	23	480	1.80E-138

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.067
	SRR3591710	White floral bud	0.050
	SRR3591711	White flower	0.180
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.307
	SRR8316896	Juvenile bud stage	0.030
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.032
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.071
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.010
	SRR6706287	Light intensity 50%	0.013
	SRR6706288	Light intensity 20%	0.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.048
	CNS0095593	Slightly white alabastrum(diploid) 2	0.103
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.061
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.204
	CNS0095603	Golden flower (diploid) 3	0.179
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.088
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.020
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.124
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000