Gene detail

Detail information of GWHGAAZE003463

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266019.2	8.8409E-110	PREDICTED: protein ODORANT1-like [Vitis vinifera]
Swissprot	tr\|Q50EX6\|ODO1_PETHY	5E-89	Protein ODORANT1
trEMBL	tr\|F6HAS0\|F6HAS0_VITVI	1E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49294.1}
TAIR10	AT4G22680.1	2E-69	myb domain protein 85

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98293885	98295272	+
GWHAAZE00000001	mRNA	98293885	98295272	+
GWHAAZE00000001	exon	98293885	98294147	+
GWHAAZE00000001	exon	98294487	98295272	+
GWHAAZE00000001	CDS	98293885	98294147	+
GWHAAZE00000001	CDS	98294487	98295015	+
GWHAAZE00000001	three_prime_UTR	98295016	98295272	+

Transcript Sequence
>GWHTAAZE003469 ATGGGGAGGCAACCTTGCTGTGACAAATTAGGGGTAAAGAAGGGACCTTGGACAGCAGAGGAGGATAGGAAGCTGGTCAACTTCATCCTCACCAATGGCCAATGCTGTTGGCGGGCCATCCCAAAACTCGCCGGACTTCGCCGCTGTGGCAAGAGCTGCCGCCTCCGTTGGACTAACTACCTCCGCCCCGACTTGAAACGTGGCCTCCTTAGTGATGACGAAGAAAAACTGGTCATTGATCTTCATGCGCGCCTTGGCAATAGGTGGTCAAAGATTGCAGCAAGTTTACCGGGAAGAACAGATAATGAGATAAAGAATCACTGGAATACCCACGTAAAGAAAAAGCTTATTAAGATGGGTATTGATCCAGTGACACACGAAACACTCCATAAACAAGAAACATCTTCAAAGACCAGCGATGGTGGGGAGAAAACTCAAATTAGCAAGCAGGATTTACCAATAAATGATGGTTGTCACACCTCTAACGACAACATAAATACCCATATCCAAAATGATGAACAGGCTAATAAATCTCAACCAGTAGATCAGCCTCACACCAATGAGGATCATGACCCCTTAATGAGCTACATACTGTCTGATGCATTTCTTAACGACGCATCGTGGACATTCGCACTTGCCGGAGACGAGTGCAGCGAATTCGGGTTATCTTCTTCAGATGAGAATTCAGCATGGTGGTCAGAATTCGAGGATTTGGTTGATAGGGAGATTGAACTTGGGTGCATGGATAACATCAATATGAACACATTAGAGACAGGTGACAAGCACTACTAGTTAAAATGCTAAAGGGGGCCTACTGGTTTGTGTATAAGGAGTTATATTTGGTTCGCCCCGCTCTAAAAGAGTTGTGTGGCTGATGAAATGAACAGGTCTTTTATGTAACAGTAATGTAAGCACATGTTCAGCAAAAAGGTATATAGAGCATATTTTGCCTTTTAAATAAACTGGATGTATGTCTAGACATTTATTTCATGTCACACGAACTTGGAGACACAAAACAAGTATGAAGTTAATAACAAAAAATTCTTGGT

Network for GWHGAAZE003463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	6.10E-13
PF00249.32	Myb_DNA-binding	71	111	4.00E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.740
	SRR3591706	second leaf	3.082
	SRR3591707	mature leaf	0.610
	SRR3591708	Shoot apex	4.899
	SRR3591709	Stem	21.452
	SRR3591710	White floral bud	1.905
	SRR3591711	White flower	1.664
	SRR3591712	Green floral bud	3.121
	SRR3591713	Yellow flower	0.697
SRP173429	SRR8316895	Juvenile bud stage	1.682
	SRR8316896	Juvenile bud stage	3.040
	SRR8316897	Juvenile bud stage	1.886
	SRR8316894	Third green stage	0.844
	SRR8316900	Third green stage	2.675
	SRR8316901	Third green stage	2.813
	SRR8316898	Complete white stage	0.262
	SRR8316899	Complete white stage	3.764
	SRR8316903	Complete white stage	0.975
	SRR8316902	Silver flowering stage	0.297
	SRR8316904	Silver flowering stage	0.912
	SRR8316905	Silver flowering stage	0.071
	SRR8316906	Gold flowering stage	0.120
	SRR8316907	Gold flowering stage	0.597
	SRR8316908	Gold flowering stage	0.225
SRP132670	SRR6706286	Control	1.860
	SRR6706287	Light intensity 50%	1.494
	SRR6706288	Light intensity 20%	1.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.523
	CNS0095593	Slightly white alabastrum(diploid) 2	3.938
	CNS0095594	Slightly white alabastrum(diploid) 3	4.210
	CNS0095595	Whole white alabastrum(diploid) 2	3.051
	CNS0095596	Whole white alabastrum(diploid) 3	2.989
	CNS0095597	Whole white alabastrum(diploid) 4	2.257
	CNS0095598	Silvery flower (diploied) 1	2.286
	CNS0095599	Silvery flower (diploied) 2	1.834
	CNS0095600	Silvery flower (diploied) 3	0.997
	CNS0095601	Golden flower (diploid) 1	1.678
	CNS0095602	Golden flower (diploid) 2	1.161
	CNS0095603	Golden flower (diploid) 3	0.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.620
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.509
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.450
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.274
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.161
	CNS0095610	Silvery flower (tetraploid) 1	2.010
	CNS0095611	Silvery flower (tetraploid) 2	1.555
	CNS0095612	Silvery flower (tetraploid) 3	1.177
	CNS0095613	Golden flower (tetraploid) 1	0.842
	CNS0095614	Golden flower (tetraploid) 2	1.152
	CNS0095615	Golden flower (tetraploid) 3	0.609
CRA001975	CRR073297	Stem 1	7.971
	CRR073298	Stem 2	4.410
	CRR073299	Stem 3	4.339
	CRR073300	Leaf 1	4.349
	CRR073301	Leaf 2	4.149
	CRR073302	Leaf 3	1.730
	CRR073303	Juvenile bud 1	0.735
	CRR073304	Juvenile bud 2	0.692
	CRR073305	Juvenile bud 3	1.078
	CRR073306	Third green 1	0.247
	CRR073307	Third green 2	0.198
	CRR073308	Third green 3	0.996
	CRR073309	Second white 1	0.162
	CRR073310	Second white 2	0.043
	CRR073311	Second white 3	0.244
	CRR073312	Silver flowering 1	0.066
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.505
	CRR073316	Gold flowering 2	1.274
	CRR073317	Gold flowering 3	0.323
	CRR073318	Tawny withering 1	13.720
	CRR073319	Tawny withering 2	16.215
	CRR073320	Tawny withering 3	23.454