Gene detail

Detail information of GWHGAAZE003483

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630948.1	0	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Nicotiana tomentosiformis]
COG	YP_004571825.1	2E-21	serine/threonine protein kinase
Swissprot	tr\|Q9LSC2\|Y3589_ARATH	1E-108	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	tr\|B9R9K2\|B9R9K2_RICCO	0	Serine-threonine protein kinase, plant-type, putative {ECO:0000313\|EMBL:EEF51479.1}
TAIR10	AT1G52540.1	9E-91	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98738695	98740394	+
GWHAAZE00000001	mRNA	98738695	98740394	+
GWHAAZE00000001	exon	98738695	98738832	+
GWHAAZE00000001	exon	98738966	98739228	+
GWHAAZE00000001	exon	98739752	98740394	+
GWHAAZE00000001	CDS	98738695	98738832	+
GWHAAZE00000001	CDS	98738966	98739228	+
GWHAAZE00000001	CDS	98739752	98740394	+

Transcript Sequence
>GWHTAAZE003489 GTAACGAATAGCAGGGATTATCCATGGGAAATATACACGCTAAAAGAGCTTCTTCATGCGACGAATAATTTCCATGACGATAATAAGATTGGAGAAGGCGGCTTTGGAAGTGTTTACTGGGGTTGTACAAGTGCAGGCATAGCAGTGAAGAGGCTAAAGGCAATGAGTGCAAAAGCAGAAATGGAATTTGCAGTGGAAGTGGAGATTCTAGGGAGGGTGAGACATAGGAATCTATTAGGGTTGAGGGGATTTTATGCTGGTGGAGATGAGAGACTTATAGTCTATGATTATATGCCTAATCACAGTTTAATCACCCATCTTCACGGCCAACTCTCTTCTGATTGCCTTTTAGATTGGCCTCGTCGTATGAGCGTAGCTATCGGATCAGCCCAAGGAATAGCGTACTTGCACCACGAAGCAAATCCTCATATAATACATAGAGACATTAAAGCGAGCAACGTCCTCTTAGATTCGGAATTCAAAGCAAAGGTAGCTGATTTTGGTTTCGCAAAGCTAATCCCAGACGGGGTCACTCATTTGACGACAAGGGTGAAGGGAACACTAGGGTACTTAGCACCCGAATACGCCATGTGGGGTAAGGTATCAGAGAGTTGCGACGTTTATAGCTTTGGAATATTACTCCTTGAAATAGTTAGTGCCAAAAAGCCCATAGAAAAACTCCCCAGTGGTGTGAAGCGTGATATAGTGACATGGGCCACACCGTATGTACAAAAGCGGGCTTATGATCACATTGCTGACCCTAGATTAAAGGGCAAGTTTGACCCATCTCAATTGAAAAATGCGATCACAGTCGCTTTGAGATGTACGGATAGTAGCCCCGAGAATCGGCCTAGCATGTTGGAGGTGGTGGAATGGCTAAAGAATGGGGTAATGAGTAGAAGGAAAGAGATATCAATAGTAAAAGATAAAGTTGAAGAAAATGAGGAAGATGAAGAGTTTGCTGATGATGAAACGGATTTTGAAGAGTTTGAAATGGGAAGAAATGTGCCTAAATTGGTGAGGGAGGGATCAAGAAGGAAATGA

Network for GWHGAAZE003483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	24	291	6.60E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.205
	SRR3591712	Green floral bud	0.079
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.085
	SRR8316896	Juvenile bud stage	5.078
	SRR8316897	Juvenile bud stage	0.296
	SRR8316894	Third green stage	0.973
	SRR8316900	Third green stage	0.635
	SRR8316901	Third green stage	1.859
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.067
SRP132670	SRR6706286	Control	0.944
	SRR6706287	Light intensity 50%	0.366
	SRR6706288	Light intensity 20%	0.323
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.084
	CNS0095593	Slightly white alabastrum(diploid) 2	1.450
	CNS0095594	Slightly white alabastrum(diploid) 3	3.255
	CNS0095595	Whole white alabastrum(diploid) 2	1.102
	CNS0095596	Whole white alabastrum(diploid) 3	1.417
	CNS0095597	Whole white alabastrum(diploid) 4	0.746
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.632
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.247
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.216
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.688
	CRR073298	Stem 2	1.287
	CRR073299	Stem 3	0.358
	CRR073300	Leaf 1	0.790
	CRR073301	Leaf 2	0.821
	CRR073302	Leaf 3	0.327
	CRR073303	Juvenile bud 1	0.115
	CRR073304	Juvenile bud 2	0.050
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.064
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	1.408
	CRR073312	Silver flowering 1	0.059
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.088
	CRR073316	Gold flowering 2	0.071
	CRR073317	Gold flowering 3	0.024
	CRR073318	Tawny withering 1	0.547
	CRR073319	Tawny withering 2	0.873
	CRR073320	Tawny withering 3	0.000