Gene detail

Detail information of GWHGAAZE003484

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAA31689.1	0	Ntc12 [Nicotiana tabacum]
COG	YP_004572412.1	1E-34	oxidoreductase
Swissprot	tr\|Q39110\|GAOX1_ARATH	1E-179	Gibberellin 20 oxidase 1
trEMBL	tr\|O80417\|O80417_TOBAC	0	Ntc12 protein {ECO:0000313\|EMBL:BAA31689.1}
TAIR10	AT4G25420.1	3E-144	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98763063	98764711	-
GWHAAZE00000001	mRNA	98763063	98764711	-
GWHAAZE00000001	exon	98764194	98764711	-
GWHAAZE00000001	exon	98763782	98764103	-
GWHAAZE00000001	exon	98763063	98763640	-
GWHAAZE00000001	CDS	98764194	98764711	-
GWHAAZE00000001	CDS	98763782	98764103	-
GWHAAZE00000001	CDS	98763362	98763640	-
GWHAAZE00000001	three_prime_UTR	98763063	98763361	-

Transcript Sequence
>GWHTAAZE003490 ATGCTTCAACCGCCTAAAGAGGAACACGAAAAAGAAAAGCAACTAATTTTCGACGCTTCCGTACTTCAACATGAATCAAACATACCTACACAGTTTATTTGGCCCGACCACGAAAAACCGTGTGCCACTACCCGCCCCCTCCCGGTCCCCCTCATCGACCTCGCCGGATTCCTCTCTGGCAATCCTACAGCTGCCACTGAAGCTTCCAAATTGGTCGGAGAGGCTTGCCAAGAGCACGGTTTCTTTCTGGTGGTGAATCATGGGGTGGATTCCAATCTCATAAATGATGCTCACAAGTACATGGACTTGTTCTTTAAGCTTCCACTTGCTGACAAGCAGAGGGCTCAAAGGCAAATGGGTGAACATTGTGGCTATGCTAGTAGCTTTACCGGAAGGTTTTCCTCTAAGCTACCGTGGAAGGAAACACTTTCTTTTCGATACTCTGCCGAGAAAGACTCTTCCAACATTGTTGAAGACTATTTCCGTACCAAAATGGGAGATGATTTTTCCAAACTCGGGAAAGTATACCAAGATTACAGCAATGCAATGAGCACGCTTTCACTAGGGATCATGGAGTTGTTGGGGATGAGCCTAGGTGTAAGCCAATCTCATTTTAAGGATTTTTTCGAAGAAAACAATTCCATAATGAGACTCAACTATTACCCGCCGTGTCAAAAACCAGACCTTACGTTAGGAACGGGCCCTCATTGTGATCCTACTTCATTAACGATCCTTCACCAAGACACTGTTGGGGGACTTGAAGTGTTTGTAGAAGATGAGTGGCGGTCCATCAGCCCCAATTACAGCGCCTTTGTTGTTAACATAGGTGACACATTCATGGCACTTTCGAACGGAAGATACAAAAGTTGCTTGCACAGGGCAGTGGTGAACAACAAAACGCCGAGGAAATCACTAGCTTTCTTTTTGTGTCCAAAGAAGGATAAGGTGGTGAGCCCACCGAGTGAATTGGTGGACACCAAAAACCCGAGAATATATCCAGATTTCACATGGCCAATGCTGCTCGAGTTCACTCAGAAACATTATAGAGCCGACATGAATACCCTCCAAGCTTTCTCCAATTGGCTTCAACAACATAAAACGTCTCAGCTCGTCTTGTAACAAAATTGTCAAAAGTCTTCTTAATTTTCCCAACTCTCTCTCCCTCTCTCCTGTTAGTGTTACTACTACTATTAGTCCTCAAGAAGTGACATTTCTTATCTCATCTTCCCATGAAAACGACGTATTGATTCAATTCCACAGGACACAGGAAATCCCTTTTTGAGTAGGGGTGTGGGGGTGCCCTGTTTTAGAGGAAAGACGGACAACCTTACATTATTAGAAGATGAAAAAACACAAATACATGGAAATCATCGAATAAAGACCTATGTGACCCAATTTTGTAATTTTCCTTGATTATG

Network for GWHGAAZE003484

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	49	154	1.30E-24
PF03171.21	2OG-FeII_Oxy	213	311	1.70E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05282	E1.14.11.12	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.803
	SRR3591706	second leaf	5.905
	SRR3591707	mature leaf	2.626
	SRR3591708	Shoot apex	9.088
	SRR3591709	Stem	15.504
	SRR3591710	White floral bud	0.618
	SRR3591711	White flower	1.372
	SRR3591712	Green floral bud	0.407
	SRR3591713	Yellow flower	0.297
SRP173429	SRR8316895	Juvenile bud stage	0.929
	SRR8316896	Juvenile bud stage	0.301
	SRR8316897	Juvenile bud stage	0.147
	SRR8316894	Third green stage	0.440
	SRR8316900	Third green stage	0.253
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.604
	SRR8316903	Complete white stage	0.210
	SRR8316902	Silver flowering stage	2.095
	SRR8316904	Silver flowering stage	1.788
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.052
	SRR8316907	Gold flowering stage	0.432
	SRR8316908	Gold flowering stage	0.285
SRP132670	SRR6706286	Control	0.212
	SRR6706287	Light intensity 50%	0.198
	SRR6706288	Light intensity 20%	0.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.878
	CNS0095593	Slightly white alabastrum(diploid) 2	0.185
	CNS0095594	Slightly white alabastrum(diploid) 3	0.105
	CNS0095595	Whole white alabastrum(diploid) 2	0.465
	CNS0095596	Whole white alabastrum(diploid) 3	0.315
	CNS0095597	Whole white alabastrum(diploid) 4	0.777
	CNS0095598	Silvery flower (diploied) 1	0.952
	CNS0095599	Silvery flower (diploied) 2	0.376
	CNS0095600	Silvery flower (diploied) 3	0.553
	CNS0095601	Golden flower (diploid) 1	0.666
	CNS0095602	Golden flower (diploid) 2	0.516
	CNS0095603	Golden flower (diploid) 3	0.590
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.676
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.240
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.349
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.111
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.129
	CNS0095612	Silvery flower (tetraploid) 3	0.152
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	2.319
	CRR073298	Stem 2	1.008
	CRR073299	Stem 3	2.600
	CRR073300	Leaf 1	0.065
	CRR073301	Leaf 2	0.519
	CRR073302	Leaf 3	0.220
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.035
	CRR073305	Juvenile bud 3	0.185
	CRR073306	Third green 1	0.390
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.183
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.038
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.077
	CRR073316	Gold flowering 2	2.364
	CRR073317	Gold flowering 3	2.376
	CRR073318	Tawny withering 1	0.237
	CRR073319	Tawny withering 2	0.168
	CRR073320	Tawny withering 3	0.460