Gene detail

Detail information of GWHGAAZE003488

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007038538.1	2.6513E-104	MRNA, cds, clone: RAFL24-31-B07, putative [Theobroma cacao]
trEMBL	tr\|A0A061G7M2\|A0A061G7M2_THECC	1E-104	MRNA, cds, clone: RAFL24-31-B07, putative {ECO:0000313\|EMBL:EOY23039.1}
TAIR10	AT5G51840.1	1E-64	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	98852385	98863678	+
GWHAAZE00000001	mRNA	98852385	98863678	+
GWHAAZE00000001	exon	98852385	98852416	+
GWHAAZE00000001	exon	98853650	98853747	+
GWHAAZE00000001	exon	98853853	98853935	+
GWHAAZE00000001	exon	98855546	98855623	+
GWHAAZE00000001	exon	98855728	98855826	+
GWHAAZE00000001	exon	98862187	98862532	+
GWHAAZE00000001	exon	98863531	98863678	+
GWHAAZE00000001	CDS	98852385	98852416	+
GWHAAZE00000001	CDS	98853650	98853747	+
GWHAAZE00000001	CDS	98853853	98853935	+
GWHAAZE00000001	CDS	98855546	98855623	+
GWHAAZE00000001	CDS	98855728	98855826	+
GWHAAZE00000001	CDS	98862187	98862456	+
GWHAAZE00000001	three_prime_UTR	98862457	98862532	+
GWHAAZE00000001	three_prime_UTR	98863531	98863678	+

Transcript Sequence
>GWHTAAZE003494 ATAATTGCTGAAGAGCAGCTTCAGTTGAGAAAGTATATTGAAGAGAATTATTCTAAAATTCGTGATGTTGAACGAGAGCTTTCAAATCTTTCATTGGAGATGAAACTTACAGCTGGACCGAAGAAAGCAGCACTTGAACACCTGAGAAAGAAAATAGAAATGTCCACTGAGAGAATTCGTCTTGGGAAGCTGAAGGAAGAAGAGGCACGGAAGGCATGGGAATCTGCATCAAAGGCTGTGAAGGATGAGGAAGCTATTAAGCAGAAGTTATGTGAAGACTTGAACAATCTGGTTCAAGAAAGCAGTAGCTCTCAGTTTGCTAGGCTGGAGGAACTAAAAAGGCGGCTAGAGGCTATGAACCCGAGCAGGTCATCCATGTCTGTACCTAACGATATGAATTCAACTGGAACTGCACAGAGTGGCACAGCTCAGGATGTTTCATCAGTTCCTAGCACATTAGAACCCGCTGGGAACACATTAAATCAAGGAATTGGTCAATTAGGTCAGAATCAACATCCTCCTTTAGATGTTGAAGGAAAAGGGAAGAAGAAAATTATGATCCAAGGGCGAGGAAAGGGAATCGGAGCAGTACCCAAGGGTAGAGTATCTGCAGCACCTGGTTGGACTGGAGCTGGTTTTGATGTTGATGGTAGAATGTGAGTGGACCTTTTCCGAGTCGCTTCCCATAGTGAAACTACAGGATGAAAGACCTGTCATTCTTCTTCCAGCCTTCCAGTTTGCTACGGACATCAAACAGCCTGAATAGCATTTAGTTTTGGACAATAGACGAGCCTGAATTGCATTTAGAGGTGTGTTTTTCCGGCAGTACAATGAAAGGGTACGTGTCTTAACTTGGTGAAAAAAAGAGTTATGGTGAGTTGGGG

Network for GWHGAAZE003488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0298

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.699
	SRR3591706	second leaf	17.963
	SRR3591707	mature leaf	17.951
	SRR3591708	Shoot apex	17.443
	SRR3591709	Stem	27.424
	SRR3591710	White floral bud	32.566
	SRR3591711	White flower	27.251
	SRR3591712	Green floral bud	39.113
	SRR3591713	Yellow flower	29.760
SRP173429	SRR8316895	Juvenile bud stage	21.937
	SRR8316896	Juvenile bud stage	33.549
	SRR8316897	Juvenile bud stage	18.369
	SRR8316894	Third green stage	15.425
	SRR8316900	Third green stage	46.470
	SRR8316901	Third green stage	48.888
	SRR8316898	Complete white stage	21.001
	SRR8316899	Complete white stage	72.955
	SRR8316903	Complete white stage	33.921
	SRR8316902	Silver flowering stage	11.052
	SRR8316904	Silver flowering stage	12.201
	SRR8316905	Silver flowering stage	6.347
	SRR8316906	Gold flowering stage	25.148
	SRR8316907	Gold flowering stage	20.289
	SRR8316908	Gold flowering stage	23.177
SRP132670	SRR6706286	Control	41.144
	SRR6706287	Light intensity 50%	43.329
	SRR6706288	Light intensity 20%	44.774
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.743
	CNS0095593	Slightly white alabastrum(diploid) 2	36.296
	CNS0095594	Slightly white alabastrum(diploid) 3	37.825
	CNS0095595	Whole white alabastrum(diploid) 2	32.870
	CNS0095596	Whole white alabastrum(diploid) 3	36.825
	CNS0095597	Whole white alabastrum(diploid) 4	31.858
	CNS0095598	Silvery flower (diploied) 1	19.359
	CNS0095599	Silvery flower (diploied) 2	22.537
	CNS0095600	Silvery flower (diploied) 3	29.942
	CNS0095601	Golden flower (diploid) 1	15.782
	CNS0095602	Golden flower (diploid) 2	18.952
	CNS0095603	Golden flower (diploid) 3	20.572
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.078
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.782
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.572
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.172
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.150
	CNS0095610	Silvery flower (tetraploid) 1	28.715
	CNS0095611	Silvery flower (tetraploid) 2	24.382
	CNS0095612	Silvery flower (tetraploid) 3	26.584
	CNS0095613	Golden flower (tetraploid) 1	19.103
	CNS0095614	Golden flower (tetraploid) 2	21.728
	CNS0095615	Golden flower (tetraploid) 3	15.258
CRA001975	CRR073297	Stem 1	33.188
	CRR073298	Stem 2	29.783
	CRR073299	Stem 3	26.427
	CRR073300	Leaf 1	46.516
	CRR073301	Leaf 2	42.612
	CRR073302	Leaf 3	41.350
	CRR073303	Juvenile bud 1	42.190
	CRR073304	Juvenile bud 2	44.218
	CRR073305	Juvenile bud 3	44.235
	CRR073306	Third green 1	15.741
	CRR073307	Third green 2	18.652
	CRR073308	Third green 3	17.177
	CRR073309	Second white 1	10.986
	CRR073310	Second white 2	16.314
	CRR073311	Second white 3	14.810
	CRR073312	Silver flowering 1	8.457
	CRR073313	Silver flowering 2	7.907
	CRR073314	Silver flowering 3	9.192
	CRR073315	Gold flowering 1	17.397
	CRR073316	Gold flowering 2	22.767
	CRR073317	Gold flowering 3	12.710
	CRR073318	Tawny withering 1	22.895
	CRR073319	Tawny withering 2	25.616
	CRR073320	Tawny withering 3	22.738