Detail information of GWHGAAZE003493


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008234304.15.77974E-82PREDICTED: zinc finger CCCH domain-containing protein 63 [Prunus mume]
Swissprottr|Q9FNZ1|C3H63_ARATH5E-76Zinc finger CCCH domain-containing protein 63
trEMBLtr|M5X176|M5X176_PRUPE4E-82Uncharacterized protein {ECO:0000313|EMBL:EMJ19231.1}
TAIR10AT5G51980.19E-64Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9897703698981727-
GWHAAZE00000001mRNA9897703698981727-
GWHAAZE00000001exon9897703698977207-
GWHAAZE00000001exon9897728398977380-
GWHAAZE00000001exon9897861098978696-
GWHAAZE00000001exon9897887498979020-
GWHAAZE00000001exon9897952498979589-
GWHAAZE00000001exon9898153498981629-
GWHAAZE00000001exon9898172598981727-
GWHAAZE00000001CDS9898172598981727-
GWHAAZE00000001CDS9898153498981629-
GWHAAZE00000001CDS9897952498979589-
GWHAAZE00000001CDS9897887498979020-
GWHAAZE00000001CDS9897861098978696-
GWHAAZE00000001CDS9897728398977380-
GWHAAZE00000001CDS9897703698977207-
Transcript Sequence

Network for GWHGAAZE003493

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.454
SRR3591706second leaf0.240
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.354
SRR3591709Stem1.039
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.316
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.330
SRR8316896Juvenile bud stage 0.094
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.124
SRR8316900Third green stage 0.230
SRR8316901Third green stage 0.127
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.418
SRR8316903Complete white stage 0.042
SRR8316902Silver flowering stage0.064
SRR8316904Silver flowering stage0.054
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.590
SRR8316907Gold flowering stage 0.505
SRR8316908Gold flowering stage 0.063
SRP132670SRR6706286Control0.304
SRR6706287Light intensity 50%0.273
SRR6706288Light intensity 20%0.317
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.075
CNS0095594Slightly white alabastrum(diploid) 30.034
CNS0095595Whole white alabastrum(diploid) 20.105
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.076
CNS0095598Silvery flower (diploied) 10.635
CNS0095599Silvery flower (diploied) 20.755
CNS0095600Silvery flower (diploied) 30.129
CNS0095601Golden flower (diploid) 10.351
CNS0095602Golden flower (diploid) 20.126
CNS0095603Golden flower (diploid) 30.161
CNS0095604Slightly white alabastrum(tetraploid) 10.189
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.068
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.060
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.156
CRR073298Stem 20.038
CRR073299Stem 30.207
CRR073300Leaf 10.165
CRR073301Leaf 20.328
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.124
CRR073304Juvenile bud 20.109
CRR073305Juvenile bud 30.189
CRR073306Third green 10.019
CRR073307Third green 20.055
CRR073308Third green 30.038
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.182
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.212
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.753
CRR073319Tawny withering 21.624
CRR073320Tawny withering 30.770