Gene detail

Detail information of GWHGAAZE003515

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009763904.1	4.88477E-98	PREDICTED: F-box protein PP2-A13-like [Nicotiana sylvestris]
Swissprot	tr\|Q9LEX0\|P2A13_ARATH	2E-89	F-box protein PP2-A13
trEMBL	tr\|D7TW69\|D7TW69_VITVI	2E-97	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34744.3}
TAIR10	AT3G61060.1	4E-73	phloem protein 2-A13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	99313484	99317373	-
GWHAAZE00000001	mRNA	99313484	99317373	-
GWHAAZE00000001	exon	99317369	99317373	-
GWHAAZE00000001	exon	99316978	99317248	-
GWHAAZE00000001	exon	99316740	99316804	-
GWHAAZE00000001	exon	99313484	99314000	-
GWHAAZE00000001	CDS	99317369	99317373	-
GWHAAZE00000001	CDS	99316978	99317248	-
GWHAAZE00000001	CDS	99316740	99316804	-
GWHAAZE00000001	CDS	99313484	99314000	-

Transcript Sequence
>GWHTAAZE003521 ATGTGTTCTTGTTCAAATCCTAGTTTGGAAGATATACCAGAGAGCTGTTTGGCCTTGGTTCTCGCTTGTTTGGAGCCGCTAGAGATCTGTAGATCAGCGCAATTGAATCAATCCTTTAACAGGGCTTCATCTGCCGATTTTGTGTGGGAGTCCAAGTTGCCTGACAACTATCAGATTCTGGTGAAGAAGCTGTTCAATGAGAAATCAGAGAGTTTGCTTAAGAAAGATATATATGCCAAACTGTGCTCTCCCATTCGCTTCGGTGGTGCCACAAAGGGAATGAAGATAACCGGTATAGATGATCGGAGGTACTGGAACCACATCTCCACTCACGAATCCAGTCTGAATCTTAGTTTGGACCTTAATTTATTTGCTAAAAATCAAGTTTCATTTTTCAAAATAGATAATTCTGATTCCAAATTATTGATGATGAGTAGATTCCACTCAATTGCATATCTTCAACAAATATGGTGGTTAGAAGTAGACGGAGACTTGGAATTCCATTTCCAAGAAGGGACTTACAGCCTGTTCTTTCGTCTCCACCTGGGACCAGCCGGTAAAGGAGTCGGCCGACGGCGGGCCTCTGATTCTGATCAAGTACGTGGGTGGGGTATCAAGCCCGTCCGTTTCCAATTGTCCACATCCAACTGTCAGCATGCCACATCAGAAGCATACTTGAATGAAAGAGGGAAGTGGATAAACTATCATGTGGGGGATTTTATTGTTGAGGATTCAAATGCACCAACAAAAATAAAGTTCTCAATGACCCAAATTGATTGCACCCATTGCAAATGTGGATTGTGCTTGGATTCTGTTTTAATACTCCCAAAGCTTGTTGCCAGGAAAAAGGTAGTTTAA

Network for GWHGAAZE003515

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.7	PP2	92	276	3.20E-30

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.726
	SRR3591706	second leaf	2.450
	SRR3591707	mature leaf	15.575
	SRR3591708	Shoot apex	1.317
	SRR3591709	Stem	21.751
	SRR3591710	White floral bud	3.348
	SRR3591711	White flower	3.479
	SRR3591712	Green floral bud	3.895
	SRR3591713	Yellow flower	0.694
SRP173429	SRR8316895	Juvenile bud stage	1.608
	SRR8316896	Juvenile bud stage	1.290
	SRR8316897	Juvenile bud stage	1.146
	SRR8316894	Third green stage	1.100
	SRR8316900	Third green stage	3.212
	SRR8316901	Third green stage	3.409
	SRR8316898	Complete white stage	1.119
	SRR8316899	Complete white stage	5.831
	SRR8316903	Complete white stage	0.975
	SRR8316902	Silver flowering stage	0.568
	SRR8316904	Silver flowering stage	0.996
	SRR8316905	Silver flowering stage	0.395
	SRR8316906	Gold flowering stage	0.660
	SRR8316907	Gold flowering stage	0.326
	SRR8316908	Gold flowering stage	1.401
SRP132670	SRR6706286	Control	3.302
	SRR6706287	Light intensity 50%	2.879
	SRR6706288	Light intensity 20%	2.284
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.741
	CNS0095593	Slightly white alabastrum(diploid) 2	5.260
	CNS0095594	Slightly white alabastrum(diploid) 3	4.373
	CNS0095595	Whole white alabastrum(diploid) 2	3.026
	CNS0095596	Whole white alabastrum(diploid) 3	2.751
	CNS0095597	Whole white alabastrum(diploid) 4	2.581
	CNS0095598	Silvery flower (diploied) 1	6.625
	CNS0095599	Silvery flower (diploied) 2	8.101
	CNS0095600	Silvery flower (diploied) 3	2.442
	CNS0095601	Golden flower (diploid) 1	5.668
	CNS0095602	Golden flower (diploid) 2	3.529
	CNS0095603	Golden flower (diploid) 3	2.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.513
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.829
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.088
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.686
	CNS0095610	Silvery flower (tetraploid) 1	1.010
	CNS0095611	Silvery flower (tetraploid) 2	1.172
	CNS0095612	Silvery flower (tetraploid) 3	1.047
	CNS0095613	Golden flower (tetraploid) 1	2.273
	CNS0095614	Golden flower (tetraploid) 2	0.615
	CNS0095615	Golden flower (tetraploid) 3	0.976
CRA001975	CRR073297	Stem 1	4.063
	CRR073298	Stem 2	3.801
	CRR073299	Stem 3	3.215
	CRR073300	Leaf 1	6.024
	CRR073301	Leaf 2	6.947
	CRR073302	Leaf 3	4.130
	CRR073303	Juvenile bud 1	4.135
	CRR073304	Juvenile bud 2	1.922
	CRR073305	Juvenile bud 3	6.457
	CRR073306	Third green 1	1.372
	CRR073307	Third green 2	0.898
	CRR073308	Third green 3	1.329
	CRR073309	Second white 1	1.400
	CRR073310	Second white 2	1.506
	CRR073311	Second white 3	0.871
	CRR073312	Silver flowering 1	1.331
	CRR073313	Silver flowering 2	0.391
	CRR073314	Silver flowering 3	2.081
	CRR073315	Gold flowering 1	8.224
	CRR073316	Gold flowering 2	10.488
	CRR073317	Gold flowering 3	8.397
	CRR073318	Tawny withering 1	26.111
	CRR073319	Tawny withering 2	55.790
	CRR073320	Tawny withering 3	22.432