Gene detail

Detail information of GWHGAAZE003525

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273978.2	0	PREDICTED: leucine-rich repeat receptor protein kinase EXS [Vitis vinifera]
COG	YP_004775215.1	1E-54	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LYN8\|EXS_ARATH	0	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|F6HP53\|F6HP53_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56459.1}
TAIR10	AT5G07280.1	0	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	99468799	99472715	+
GWHAAZE00000001	mRNA	99468799	99472715	+
GWHAAZE00000001	exon	99468799	99471499	+
GWHAAZE00000001	exon	99471571	99472106	+
GWHAAZE00000001	exon	99472479	99472715	+
GWHAAZE00000001	CDS	99468799	99471499	+
GWHAAZE00000001	CDS	99471571	99472106	+
GWHAAZE00000001	CDS	99472479	99472715	+

Transcript Sequence
>GWHTAAZE003531 ATGGGAATGGCGTTTAGGCTGCTTTATTTCTTCTTCATCATTTTCTTCCACCTCTTGTTCTTGTTCTTCAACCTCTCATTCTCATCTTTGGACCAAAACCCAGAAACACAATGCTTGCTTTCTTTCAAAAACGCCCTTGAAAACCCACAATTTCTCTCCTCATCATGGACCCCTAACACCCCTCACTGTCAGTGGCATGGTGTTTTATGCCAAAATGGCCGACTCAGTTCCCTCAATCTCTCTTCTCTCTCCCTCCAAGGACCCATTTCCCCTGCCCTTTTCTCTCTCTCAACACTCACCGTCCTCGACTTGTCTTCAAATCTTTTCTACGGCCAACTCTTCCCGGAAATATCCCGGCTTCACAAGTTAATCGTCTTAGACCTGGGTGATAACCACTTCTCCGGAGAGTTACCGAGTCAACTCGGTGGGTTGACTAGGCTAGAGACACTCAAACTTGGGCCTAACTACTTCACTGGAAAAATCCCTCCGGAGATTGGAAAAATGGCTCTACTCCGGTCACTCGATCTAGCCGGAAATGCACTGACCGGAAATATCCCATCGGAGCTTGGGGATCTGACCGACCTCCAGTTTGTGTCCATTGGCAACAATCTCCTCTCAGGTTCTCTCTCTCCAACTCTCTTCACTAATCTTCAGTCTTTAACCTTTTTGGATGTCTCAAACAACTCCCTCTCCAGCAACATTCCGCCGGAAATCGGAAACTTGAAGAACCTTACTGATCTTTACATCGGAATCAACCATTTCTCTGGCGTTTTGCCGCCGGAAATCGGTCAACTTTCTAGTCTCCAAAACTTCTTTTCTCCTTCTTGTTCACTTAAAGGACCATTACCCGAAACAATCTCACAGCTCAAGTCACTCAGCAAGCTTGATCTTTCATACAACCCATTGAAATGCTCCATCCCAAAATCCATCGGAAAATTGCAGAATTTAACCATTTTGAACCTCGTTTACACGGAGCTAAACGGTTCAATACCCGCCGAACTGGGTCATTGTCGCAATTTGAAGACAGTGATGCTATCTTTCAACTCTTTAACAGGGCCATTGCCGGATGAACTTGCAGAGCTACCCATACTTTCTTTCTCGGCCGAGATGAACCAGCTTTCGGGACCACTGCCTTCTTGGCTGGGAAGATGGGACAGAATTGATTCACTTTTGTTGACCAACAATCGGTTTACTGGTAGAATTCCGCCGGAGATTGGAAATTGTTCACTTCTTGATCATATTAGCCTCAGTAACAACTTGCTGATAGGTCCTATTCCGAAAGAACTCTGTAATGCGTGTTCTCTTACTGAGCTTGATCTTGATAGTAATTTCCTTACGGGCACAATTGAAGATACGTTTGTGATGTGCACTAATCTGACCCAGTTGGTTTTGGTGGATAACCAAATTTTTGGGCCAATACCAGATTACCTTTCAGAACTTCCATTAATGGTTCTTGATCTTGATTCTAATAATTTCACGGGTTCTATTCCAGTGAGTTTATGGAATTCAACGAATTTGATGGAGTTTTCGGCTTCAAATAATCAGTTAGAGGGTACACTTCCTTCAGAGATTGGCAATGCTGGTTCACTGCAGAGGCTTGTTCTTTTTAGCAATCACTTGAAAGGCACAATCCCTAGGGAAATTGGGAATCTCACTTCTCTTTCTGTCCTGAATTTGAATTCCAATTTCCTCGAAGGGAATATCCCTCTTGAGCTTGGGAAGTGCATTTCTCTTACCACATTAGACATTGGAAACAACTGGCTCAACGGTTCAATACCCGAGGGACTTGCAGCCCTGGATCAGTTACAATGCTTAGTTCTTTCTTATAACAATCTCTCTGGGTCAATTCCTTCTAAGGGCTCGAAGTATTTTCAGCAGGTTAATATGCCGGACTCAAGCTTTGTTCAGCACCATGGAGTATATGATCTCTCTCACAACAGGTTGTCTGGTCCAATACCCGAGGAATTGGGTAGCTGTGTGGTGGTGGTGGATCTTCTGATTAGCTTCAACATGCTTTCAGGAGAGATTCCGAATTCGCTTGCCCGGTTAATTAATCTAACTACCTTAGATTTGTCTAATAACATGCTTTCAGGTGGTATTCCTATTGAATTTGGCAACTCAATAAAGCTACAAGGCTTGTATTTGGGGAATAACCAGCTCACTGACCCCATACCAGAAAGCTTAGGCCAACTGAGGGCCTTGGTGAAATTGAATTTTACTGGAAATAAGCTTTCGGGTTCAATCCCATCTACATTTGGGAACCTAAACGGGCTCACCCACTTGGATTTAAGTAATAACACGCTTAATGGTGAGCTTCCTTCAACTCTTTCCAGGATGGTGAATCTAGTAGGCTTTTATGTACAACAAAATAAGCTTTCCGGCAGTATAGATAAGCTGTTTGTGAACTCTATTGGGTGGAGAATTGAAATTGTTAACTTCAGTAATAATTTATTTAACGGCGAGTTGCCATCATCTTTGGGCAATTTATCGTATTTGATGTTCTTGGATCTTCATGGTAATAGCTTTATGGGGAAGATCCCCTCTGGGCTTGGTAACCTTATGCAACTCCAATATGTTGATGTTTCGAGCAACAGACTCTCAGGGCAGATCCCTGAGAACTTATGTGGTCTTGTCAACTTGGTTTCTGTCAATTTGGAGGAAAATAGATTAGACGGGCCTGTTCCAAGGAATGGGATTTGCCTGAAGAGTTTTGAAAGAAGATCGCCACTGTTAAATGTTTGGGGGCTGTCATCAATTGTGGTGGTGACTGTGTTGATAACGCTTTCAATAGCTATTGTGATACGCATATGGCTTAACCGAAGTGCCAAGCAAAGTGATTCTGACCCCGAGGAAATTGAGGAGAGCAAATTGAACAGTTCTGTTGATCAGAATCTGTATTTCTTGAGTAGCAGTAGATCGAAAGAGCCTCTTAGCATTAATGTTGCAATGTTCGAACAGCCGCTTTTGAAGCTAACTTTAGTTGACGTACTTGAAGCCACAAACAACTTTTGCAAGACTAACATAATTGGGGATGGAGGCTTTGGAACCGTTTACAAAGCCACTTTGCAAGATGGGAAAACTGTAGCGGTTAAGAAGCTAAACCAAGCTAAAACTCAGGGTCACCGGGAGTTCCTTGCTGAAATGGAAACCATTGGCAAAGTGAAGCATCGAAATCTTGTTCCTTTGCTTGGGTACTGCTCTTTGGGCGAGGAGAAGCTGCTTGTTTACGAGTATATGCCAACTGGACCCGAGTTTAAAGACATTGAAGGGGGTAATTTGGTGGGTTGGGCGATTCAAAAGATCAAGAATGGTCAAGCTGTTGATGTACTTGATCCGATGGTCCTCGATGCTGATTCAAAGCCGGTGATGCTTCAAACTTTGCAGATTGCTGCTGTATGTCTGGTGGATAATCCGGCTCACCGGCCAACAATGCTTCAGGTGTTGAAATTCTTGAAAGGGATTCAAGATGAATAA

Network for GWHGAAZE003525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	33	70	2.30E-08
PF00560.34	LRR_1	292	313	1.2
PF00560.34	LRR_1	685	704	1.9
PF13855.7	LRR_8	733	792	1.00E-06
PF07714.18	PK_Tyr_Ser-Thr	1007	1082	1.10E-13

Protein Sequence

>GWHPAAZE003528
MGMAFRLLYFFFIIFFHLLFLFFNLSFSSLDQNPETQCLLSFKNALENPQFLSSSWTPNTPHCQWHGVLCQNGRLSSLNLSSLSLQGPISPALFSLSTLTVLDLSSNLFYGQLFPEISRLHKLIVLDLGDNHFSGELPSQLGGLTRLETLKLGPNYFTGKIPPEIGKMALLRSLDLAGNALTGNIPSELGDLTDLQFVSIGNNLLSGSLSPTLFTNLQSLTFLDVSNNSLSSNIPPEIGNLKNLTDLYIGINHFSGVLPPEIGQLSSLQNFFSPSCSLKGPLPETISQLKSLSKLDLSYNPLKCSIPKSIGKLQNLTILNLVYTELNGSIPAELGHCRNLKTVMLSFNSLTGPLPDELAELPILSFSAEMNQLSGPLPSWLGRWDRIDSLLLTNNRFTGRIPPEIGNCSLLDHISLSNNLLIGPIPKELCNACSLTELDLDSNFLTGTIEDTFVMCTNLTQLVLVDNQIFGPIPDYLSELPLMVLDLDSNNFTGSIPVSLWNSTNLMEFSASNNQLEGTLPSEIGNAGSLQRLVLFSNHLKGTIPREIGNLTSLSVLNLNSNFLEGNIPLELGKCISLTTLDIGNNWLNGSIPEGLAALDQLQCLVLSYNNLSGSIPSKGSKYFQQVNMPDSSFVQHHGVYDLSHNRLSGPIPEELGSCVVVVDLLISFNMLSGEIPNSLARLINLTTLDLSNNMLSGGIPIEFGNSIKLQGLYLGNNQLTDPIPESLGQLRALVKLNFTGNKLSGSIPSTFGNLNGLTHLDLSNNTLNGELPSTLSRMVNLVGFYVQQNKLSGSIDKLFVNSIGWRIEIVNFSNNLFNGELPSSLGNLSYLMFLDLHGNSFMGKIPSGLGNLMQLQYVDVSSNRLSGQIPENLCGLVNLVSVNLEENRLDGPVPRNGICLKSFERRSPLLNVWGLSSIVVVTVLITLSIAIVIRIWLNRSAKQSDSDPEEIEESKLNSSVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDVLEATNNFCKTNIIGDGGFGTVYKATLQDGKTVAVKKLNQAKTQGHREFLAEMETIGKVKHRNLVPLLGYCSLGEEKLLVYEYMPTGPEFKDIEGGNLVGWAIQKIKNGQAVDVLDPMVLDADSKPVMLQTLQIAAVCLVDNPAHRPTMLQVLKFLKGIQDE

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.186
	SRR3591706	second leaf	1.323
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	7.836
	SRR3591709	Stem	1.509
	SRR3591710	White floral bud	2.849
	SRR3591711	White flower	3.190
	SRR3591712	Green floral bud	3.486
	SRR3591713	Yellow flower	0.033
SRP173429	SRR8316895	Juvenile bud stage	4.497
	SRR8316896	Juvenile bud stage	4.083
	SRR8316897	Juvenile bud stage	1.696
	SRR8316894	Third green stage	2.989
	SRR8316900	Third green stage	5.419
	SRR8316901	Third green stage	3.608
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	4.375
	SRR8316903	Complete white stage	0.675
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.010
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.015
SRP132670	SRR6706286	Control	4.571
	SRR6706287	Light intensity 50%	5.028
	SRR6706288	Light intensity 20%	5.371
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.147
	CNS0095593	Slightly white alabastrum(diploid) 2	4.014
	CNS0095594	Slightly white alabastrum(diploid) 3	2.048
	CNS0095595	Whole white alabastrum(diploid) 2	3.148
	CNS0095596	Whole white alabastrum(diploid) 3	1.318
	CNS0095597	Whole white alabastrum(diploid) 4	1.908
	CNS0095598	Silvery flower (diploied) 1	6.038
	CNS0095599	Silvery flower (diploied) 2	3.253
	CNS0095600	Silvery flower (diploied) 3	2.370
	CNS0095601	Golden flower (diploid) 1	3.958
	CNS0095602	Golden flower (diploid) 2	4.790
	CNS0095603	Golden flower (diploid) 3	3.852
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.762
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.945
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.507
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.724
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.910
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.302
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	1.534
	CNS0095612	Silvery flower (tetraploid) 3	1.021
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.107
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	9.275
	CRR073298	Stem 2	8.533
	CRR073299	Stem 3	8.517
	CRR073300	Leaf 1	9.123
	CRR073301	Leaf 2	8.685
	CRR073302	Leaf 3	7.122
	CRR073303	Juvenile bud 1	8.349
	CRR073304	Juvenile bud 2	1.699
	CRR073305	Juvenile bud 3	13.683
	CRR073306	Third green 1	0.017
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.035
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.039
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.001
	CRR073315	Gold flowering 1	0.450
	CRR073316	Gold flowering 2	0.412
	CRR073317	Gold flowering 3	0.178
	CRR073318	Tawny withering 1	1.363
	CRR073319	Tawny withering 2	0.493
	CRR073320	Tawny withering 3	0.718