Detail information of GWHGAAZE003536


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011076184.10PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Sesamum indicum]
COGNP_622975.19E-89DNA mismatch repair protein MutS
Swissprottr|O65607|MSH3_ARATH0DNA mismatch repair protein MSH3
trEMBLtr|A0A068UAM4|A0A068UAM4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313|EMBL:CDP05214.1}
TAIR10AT4G25540.10homolog of DNA mismatch repair protein MSH3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9961520699621041-
GWHAAZE00000001mRNA9961520699621041-
GWHAAZE00000001exon9962008599621041-
GWHAAZE00000001exon9961946399619657-
GWHAAZE00000001exon9961841199618575-
GWHAAZE00000001exon9961818399618281-
GWHAAZE00000001exon9961783899618089-
GWHAAZE00000001exon9961746499617715-
GWHAAZE00000001exon9961722299617353-
GWHAAZE00000001exon9961688099617140-
GWHAAZE00000001exon9961672099616791-
GWHAAZE00000001exon9961636099616509-
GWHAAZE00000001exon9961569599616189-
GWHAAZE00000001exon9961520699615556-
GWHAAZE00000001CDS9962008599621041-
GWHAAZE00000001CDS9961946399619657-
GWHAAZE00000001CDS9961841199618575-
GWHAAZE00000001CDS9961818399618281-
GWHAAZE00000001CDS9961783899618089-
GWHAAZE00000001CDS9961746499617715-
GWHAAZE00000001CDS9961722299617353-
GWHAAZE00000001CDS9961688099617140-
GWHAAZE00000001CDS9961672099616791-
GWHAAZE00000001CDS9961636099616509-
GWHAAZE00000001CDS9961569599616189-
GWHAAZE00000001CDS9961520699615556-
Transcript Sequence

Network for GWHGAAZE003536

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01624.21MutS_I1192291.90E-27
PF05188.18MutS_II2463275.90E-10
PF05192.19MutS_III4337652.30E-31
PF00488.22MutS_V82010282.40E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08736MSH3 Mismatch repair map03430

Gene Ontology

GO term OntologyName
GO:0006298biological_processmismatch repair
GO:0005524molecular_functionATP binding
GO:0030983molecular_functionmismatched DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.009
SRR3591706second leaf2.284
SRR3591707mature leaf3.509
SRR3591708Shoot apex9.299
SRR3591709Stem2.450
SRR3591710White floral bud6.168
SRR3591711White flower8.352
SRR3591712Green floral bud5.259
SRR3591713Yellow flower4.453
SRP173429 SRR8316895Juvenile bud stage 12.555
SRR8316896Juvenile bud stage 14.710
SRR8316897Juvenile bud stage 5.037
SRR8316894Third green stage 5.110
SRR8316900Third green stage 7.773
SRR8316901Third green stage 6.981
SRR8316898Complete white stage 1.663
SRR8316899Complete white stage 10.340
SRR8316903Complete white stage 3.802
SRR8316902Silver flowering stage2.865
SRR8316904Silver flowering stage4.180
SRR8316905Silver flowering stage1.657
SRR8316906Gold flowering stage 4.681
SRR8316907Gold flowering stage 4.965
SRR8316908Gold flowering stage 4.652
SRP132670SRR6706286Control7.371
SRR6706287Light intensity 50%7.650
SRR6706288Light intensity 20%7.557
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.325
CNS0095593Slightly white alabastrum(diploid) 23.253
CNS0095594Slightly white alabastrum(diploid) 35.767
CNS0095595Whole white alabastrum(diploid) 23.274
CNS0095596Whole white alabastrum(diploid) 31.922
CNS0095597Whole white alabastrum(diploid) 43.012
CNS0095598Silvery flower (diploied) 17.504
CNS0095599Silvery flower (diploied) 26.106
CNS0095600Silvery flower (diploied) 39.098
CNS0095601Golden flower (diploid) 16.404
CNS0095602Golden flower (diploid) 27.666
CNS0095603Golden flower (diploid) 37.399
CNS0095604Slightly white alabastrum(tetraploid) 13.829
CNS0095605Slightly white alabastrum(tetraploid) 23.153
CNS0095606Slightly white alabastrum(tetraploid) 37.309
CNS0095607Whole white alabastrum(tetraploid) 12.048
CNS0095608Whole white alabastrum(tetraploid) 21.684
CNS0095609Whole white alabastrum(tetraploid) 34.184
CNS0095610Silvery flower (tetraploid) 19.648
CNS0095611Silvery flower (tetraploid) 213.725
CNS0095612Silvery flower (tetraploid) 37.151
CNS0095613Golden flower (tetraploid) 14.085
CNS0095614Golden flower (tetraploid) 25.372
CNS0095615Golden flower (tetraploid) 33.151
CRA001975CRR073297Stem 119.352
CRR073298Stem 213.251
CRR073299Stem 312.902
CRR073300Leaf 16.812
CRR073301Leaf 25.854
CRR073302Leaf 34.417
CRR073303Juvenile bud 13.849
CRR073304Juvenile bud 22.792
CRR073305Juvenile bud 35.333
CRR073306Third green 10.634
CRR073307Third green 20.366
CRR073308Third green 31.104
CRR073309Second white 10.800
CRR073310Second white 21.160
CRR073311Second white 30.905
CRR073312Silver flowering 10.885
CRR073313Silver flowering 21.428
CRR073314Silver flowering 30.784
CRR073315Gold flowering 13.226
CRR073316Gold flowering 24.584
CRR073317Gold flowering 32.214
CRR073318Tawny withering 12.894
CRR073319Tawny withering 22.780
CRR073320Tawny withering 33.403