Gene detail

Detail information of GWHGAAZE003537

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010107434.1	2.2597E-178	E3 ubiquitin-protein ligase COP1 [Morus notabilis]
COG	YP_001868564.1	2E-16	hypothetical protein Npun_F5300
Swissprot	tr\|Q9FFA7\|RUP2_ARATH	3E-142	WD repeat-containing protein RUP2
trEMBL	tr\|W9S7H7\|W9S7H7_9ROSA	8E-179	E3 ubiquitin-protein ligase COP1 {ECO:0000313\|EMBL:EXC15972.1}
TAIR10	AT5G23730.1	3E-114	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	99647683	99648735	+
GWHAAZE00000001	mRNA	99647683	99648735	+
GWHAAZE00000001	exon	99647683	99647879	+
GWHAAZE00000001	exon	99647937	99648735	+
GWHAAZE00000001	CDS	99647683	99647879	+
GWHAAZE00000001	CDS	99647937	99648735	+

Transcript Sequence
>GWHTAAZE003543 GAAGATCAGAGACCCAGGTTGGAGTGGGACTTCAGTCTCTCCGCCGTCGTTTCTTCCAGCACCGCCGCAGGTACTTTCTCCGATACCCTCGGCGTCATCGAATTCGACCCCTCCGGCACCTTCTTAGCCACCGGCGGTATTTCCAGAAAAATTAGGATATACAAATTCAATTCTTTGTTACCAAATGGTAGTAGTAGATGCACCCCAGCAAAGCTCAGTAGCCTCCGGTGGAAACCCGGTTCAAGCGGTGGAGTGATCGGGTCGGGAGACTACGATGGGGTTGTTATGGAGTACGATCTCGAACGGAGAATCCCTGTTTTCGAGAGAGACGAGCATGGGGGAAGGCGGGTTTGGAGCATGGACTATTCGCATTGGGATCCGGTTATGGGAGCATCTGGGTCAGATGATGGAACCATGCAAATGTGGGACCCAAGATGCGACGGCGGGAGATGTGTGGCTACAGTACAACCCACAGCAGCACGTAATCCAGTATGCTGCGTGGAGTTTAATCCATTTGGGGGTGCGTTGATAGCCGTGGGATGCGCTGACCGGAAGGCGTACGGTTACGATGTGAGGAGAATGAACGAACCAGTGATGGTCCTCGATGGGCATCAAAAAACGGTGACGTACGTGAGATTCCTTGATCATCACACGGTGGTGACGTCGGGTACGGATGGGTGTTTGAAGATGTGGGATACAGAGGATCAGCGCCTTTTACGGACATACAAGGGCCATGCTAATAGGAGGAGGTTTACGGGGTTATCGGTGTGGAGGAATGGGGGCCTGTTTGGTTGCGGCTCAGAAGATAACCAGGTTTTTGTGTACGATAAGAGGTGGGGTGAGCCCGTTTGGGTGCGTGGTTTCGAGCCAGTGGGCGAACAAGGGTTCGTGAGTAGCGTGTGCTGGAGTCAAGTGGGTGAAGATGATGAATGCACACTAGCGGCTGGGGGATCTGATGGGATGTTGCAGGTTTTCATTGGGAAAAGGACTTCTTGA

Network for GWHGAAZE003537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	196	232	0.00019

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10143	RFWD2, COP1	Ubiquitin mediated proteolysis	map04120
		p53 signaling pathway	map04115
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.612
	SRR3591706	second leaf	1.566
	SRR3591707	mature leaf	2.607
	SRR3591708	Shoot apex	3.648
	SRR3591709	Stem	1.260
	SRR3591710	White floral bud	5.697
	SRR3591711	White flower	2.278
	SRR3591712	Green floral bud	0.403
	SRR3591713	Yellow flower	0.591
SRP173429	SRR8316895	Juvenile bud stage	1.263
	SRR8316896	Juvenile bud stage	1.174
	SRR8316897	Juvenile bud stage	0.943
	SRR8316894	Third green stage	1.320
	SRR8316900	Third green stage	1.668
	SRR8316901	Third green stage	1.751
	SRR8316898	Complete white stage	4.047
	SRR8316899	Complete white stage	2.609
	SRR8316903	Complete white stage	5.748
	SRR8316902	Silver flowering stage	3.668
	SRR8316904	Silver flowering stage	3.206
	SRR8316905	Silver flowering stage	2.581
	SRR8316906	Gold flowering stage	6.670
	SRR8316907	Gold flowering stage	2.516
	SRR8316908	Gold flowering stage	4.093
SRP132670	SRR6706286	Control	8.177
	SRR6706287	Light intensity 50%	5.799
	SRR6706288	Light intensity 20%	6.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.078
	CNS0095593	Slightly white alabastrum(diploid) 2	1.571
	CNS0095594	Slightly white alabastrum(diploid) 3	1.928
	CNS0095595	Whole white alabastrum(diploid) 2	0.934
	CNS0095596	Whole white alabastrum(diploid) 3	0.262
	CNS0095597	Whole white alabastrum(diploid) 4	1.181
	CNS0095598	Silvery flower (diploied) 1	3.881
	CNS0095599	Silvery flower (diploied) 2	4.431
	CNS0095600	Silvery flower (diploied) 3	6.517
	CNS0095601	Golden flower (diploid) 1	4.726
	CNS0095602	Golden flower (diploid) 2	3.437
	CNS0095603	Golden flower (diploid) 3	4.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.483
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.245
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.513
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.546
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.329
	CNS0095610	Silvery flower (tetraploid) 1	8.247
	CNS0095611	Silvery flower (tetraploid) 2	5.401
	CNS0095612	Silvery flower (tetraploid) 3	5.687
	CNS0095613	Golden flower (tetraploid) 1	2.670
	CNS0095614	Golden flower (tetraploid) 2	4.921
	CNS0095615	Golden flower (tetraploid) 3	0.679
CRA001975	CRR073297	Stem 1	1.129
	CRR073298	Stem 2	0.602
	CRR073299	Stem 3	0.509
	CRR073300	Leaf 1	0.117
	CRR073301	Leaf 2	1.613
	CRR073302	Leaf 3	1.066
	CRR073303	Juvenile bud 1	0.527
	CRR073304	Juvenile bud 2	1.210
	CRR073305	Juvenile bud 3	2.145
	CRR073306	Third green 1	10.307
	CRR073307	Third green 2	6.347
	CRR073308	Third green 3	8.450
	CRR073309	Second white 1	2.825
	CRR073310	Second white 2	3.435
	CRR073311	Second white 3	4.987
	CRR073312	Silver flowering 1	2.308
	CRR073313	Silver flowering 2	3.780
	CRR073314	Silver flowering 3	1.344
	CRR073315	Gold flowering 1	4.110
	CRR073316	Gold flowering 2	1.285
	CRR073317	Gold flowering 3	0.601
	CRR073318	Tawny withering 1	0.227
	CRR073319	Tawny withering 2	1.010
	CRR073320	Tawny withering 3	0.418