Gene detail

Detail information of GWHGAAZE003541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05209.1	5.2639E-123	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	9E-59	Myb-related protein Myb4
trEMBL	tr\|A0A068UAM3\|A0A068UAM3_COFCA	2E-123	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05209.1}
TAIR10	AT3G61250.1	3E-80	myb domain protein 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	99694496	99697028	+
GWHAAZE00000001	mRNA	99694496	99697028	+
GWHAAZE00000001	exon	99694496	99694628	+
GWHAAZE00000001	exon	99695814	99695943	+
GWHAAZE00000001	exon	99696437	99697028	+
GWHAAZE00000001	CDS	99694496	99694628	+
GWHAAZE00000001	CDS	99695814	99695943	+
GWHAAZE00000001	CDS	99696437	99697028	+

Transcript Sequence
>GWHTAAZE003547 ATGGGAAGAGCACCTTGCTGTGACAAAAATGAAGTTAAGAAAGGCGCTTGGACTCCTCAAGAGGATAAGATCCTTGTTGACTACATCACCAACAACGGTCGTGGTACTTGGCGTTCTCTCCCTAAACTTGCAGGTCTGCTCCGATGTGGGAAAAGCTGTCGGCTTCGGTGGGCAAACTATCTTCGACCTGATATTAAACGTGGTCCCTTCAGTCCCGAAGAAGAGATTAATATCATCCAGCTGCACAGCATGCTCGGTAACAAGTGGGCAGCTATAGCATCACACCTCCCAGGAAGAACCGATAATGAGGTAAAAAACTTCTGGAACTCTCATCTAAAGAAGCGTCTGCAAACATATTGTCCATCCTCCAGTTTCAAGTCTATTAACACGAAATCCGAGTCCCCATCTAGTCGGCACACGCTACAGTGGGAGAGTGCCAGAGTTGAGGCCGAGGCCCGGTTGTCAAAGGATCCATTGCTGCTCAACCCATCATCATCAACGGGTAAACCTGAGTGTGACTACTTCCTCCGCGCATGGAATTCTGAAGTTGGAAAATCATTTAGAAAGATCAAGAACCCAGATGAAGTGGAATGTGAAAGCCCCATTTCTCGGATATCCTCATCAATAAAAGTTGAAGCAGGTTCAGGTATCACGACCGAAGTGGGACCCACGGGGAACCTTAACTTTACTGACATGACCGACAAACAAGAAGATATGGGACATATGAACTCAAATTCATATGAACTGGATAACTGCTCAGATTTGGCATTGAAGCTGCTCTTGGATTTCCCTGGAGACAGCTATATGGACTTCCTGCAAGAAGAAACGGATGATGTCTCCATTTTTCTACAGTAA

Network for GWHGAAZE003541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	3.50E-12
PF00249.32	Myb_DNA-binding	67	112	5.10E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.536
	SRR3591706	second leaf	24.513
	SRR3591707	mature leaf	4.384
	SRR3591708	Shoot apex	38.817
	SRR3591709	Stem	1.840
	SRR3591710	White floral bud	13.434
	SRR3591711	White flower	8.636
	SRR3591712	Green floral bud	11.000
	SRR3591713	Yellow flower	0.412
SRP173429	SRR8316895	Juvenile bud stage	13.586
	SRR8316896	Juvenile bud stage	9.880
	SRR8316897	Juvenile bud stage	5.529
	SRR8316894	Third green stage	3.551
	SRR8316900	Third green stage	7.961
	SRR8316901	Third green stage	7.973
	SRR8316898	Complete white stage	0.377
	SRR8316899	Complete white stage	13.832
	SRR8316903	Complete white stage	1.975
	SRR8316902	Silver flowering stage	0.096
	SRR8316904	Silver flowering stage	0.216
	SRR8316905	Silver flowering stage	0.050
	SRR8316906	Gold flowering stage	0.353
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.030
SRP132670	SRR6706286	Control	7.243
	SRR6706287	Light intensity 50%	7.726
	SRR6706288	Light intensity 20%	9.441
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.956
	CNS0095593	Slightly white alabastrum(diploid) 2	15.376
	CNS0095594	Slightly white alabastrum(diploid) 3	18.000
	CNS0095595	Whole white alabastrum(diploid) 2	22.334
	CNS0095596	Whole white alabastrum(diploid) 3	5.928
	CNS0095597	Whole white alabastrum(diploid) 4	19.060
	CNS0095598	Silvery flower (diploied) 1	15.648
	CNS0095599	Silvery flower (diploied) 2	13.874
	CNS0095600	Silvery flower (diploied) 3	3.389
	CNS0095601	Golden flower (diploid) 1	12.330
	CNS0095602	Golden flower (diploid) 2	8.125
	CNS0095603	Golden flower (diploid) 3	5.167
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.755
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.525
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.607
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.931
	CNS0095610	Silvery flower (tetraploid) 1	0.285
	CNS0095611	Silvery flower (tetraploid) 2	2.695
	CNS0095612	Silvery flower (tetraploid) 3	1.033
	CNS0095613	Golden flower (tetraploid) 1	0.052
	CNS0095614	Golden flower (tetraploid) 2	0.537
	CNS0095615	Golden flower (tetraploid) 3	0.119
CRA001975	CRR073297	Stem 1	18.211
	CRR073298	Stem 2	12.687
	CRR073299	Stem 3	15.374
	CRR073300	Leaf 1	13.521
	CRR073301	Leaf 2	9.391
	CRR073302	Leaf 3	8.157
	CRR073303	Juvenile bud 1	9.146
	CRR073304	Juvenile bud 2	8.106
	CRR073305	Juvenile bud 3	6.846
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.139
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.823
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.216
	CRR073316	Gold flowering 2	1.960
	CRR073317	Gold flowering 3	0.594
	CRR073318	Tawny withering 1	8.003
	CRR073319	Tawny withering 2	16.116
	CRR073320	Tawny withering 3	11.744