Gene detail

Detail information of GWHGAAZE003554

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268346.1	0	PREDICTED: signal peptide peptidase-like 1 [Vitis vinifera]
Swissprot	tr\|Q93Z32\|SIPL1_ARATH	0	Signal peptide peptidase-like 1
trEMBL	tr\|A5BNP3\|A5BNP3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83442.1}
TAIR10	AT4G33410.1	2E-161	SIGNAL PEPTIDE PEPTIDASE-LIKE 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100021158	100023799	+
GWHAAZE00000001	mRNA	100021158	100023799	+
GWHAAZE00000001	exon	100021158	100021955	+
GWHAAZE00000001	exon	100023321	100023525	+
GWHAAZE00000001	exon	100023660	100023799	+
GWHAAZE00000001	CDS	100021158	100021955	+
GWHAAZE00000001	CDS	100023321	100023525	+
GWHAAZE00000001	CDS	100023660	100023799	+

Transcript Sequence
>GWHTAAZE003560 ATGGAGCCTTTGTGGAAGCTCGTGTATTTGTTTGAGCCAGCTCCAGTCACTCTCATTTTGACGGCCATAGCTGTGACATTTGGATCTGCTTTTAGAGCTCTAAACTATGGGAAAGAAATGGAGAGAAACCGTGATTTATCAGAAGCGTCCATTACTTTGGACAGGTCACAAGCGCTAATGATACCAGTAATGAGCTCTTGCAGCTTGCTTTTGATGTTCTACTTGTTTTCTTCTGTCTCACAACTCCTCACTGTTTTCACCACCGTTGCCTCTGCTTCGTCTCTCTACTTCTTCCTATCACCTTATGTTGCCCATGTTAAGTCACAATTTGGTTTGGCCGACCCATATGTCTCTCGGTGTTGTTCTAAATCATTTACCCGAATGCAGGCCTTTCTATTGTTGCTATGCTGCAGTATAGTTGCAGTGTGGCTTGTTTCAGGGCATTGGGTATTGAACAACCTGTTGGGCATCTCTCTCTGCATTGCATTTGTGAGTCACGTACGTCTACCCAACATTAAAATATGCGCAATGCTCCTTTGTTGTTTGTTTGTGTACGACATATTCTGGGTATTTTATTCCGAGAGGTTTTTTGGAGCAAATGTTATGGTTTCGGTAGCAACACAGCAAGCATCTAATCCTGTTCACACAGTGGCAAACAGTTTGAGCCTTCCTGGTTTGCAGTTGATCACAAAGAAGCTGGAGTTGCCAGTTAAGATTGTGTTTCCCAGGAATTTGTTGGGTGGTGTGCTTCCTGGAAATAATGCTGCTGAATTTATGATGCTTGGTCTTGGCGACATGGCTATTCCTTCTATGCTTCTGGCACTAGTTCTCTGTTTTGATCACAGAAAGGGCAAGGAATCCGCTGATTCCTTGGATATACCTCCTTACAAAGGGCACAAATACATCTGGTATGCCCTTTCTGGATATGCAGTAGGGCTCATAACTGCTTTGGCAGCTGGTGTCTTGACTCACTCTCCTCAACCAGCACTTCTATATCTGGTATGTACCTTCAACTCTGGGACCAATAATTGTGATTTCATGGATGAGAAGGGAGCTAGCAGAGCTGTGGGAAGGAGCGGAGCCCAATTTGATCGAGAAAACGCAGTTAATAGAAGTTTGAGATGTTACAGCAACAGCTCTTGA

Network for GWHGAAZE003554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0041

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04258.14	Peptidase_A22B	49	335	1.40E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.311
	SRR3591706	second leaf	20.839
	SRR3591707	mature leaf	21.861
	SRR3591708	Shoot apex	33.188
	SRR3591709	Stem	46.685
	SRR3591710	White floral bud	45.359
	SRR3591711	White flower	49.591
	SRR3591712	Green floral bud	39.255
	SRR3591713	Yellow flower	42.128
SRP173429	SRR8316895	Juvenile bud stage	28.560
	SRR8316896	Juvenile bud stage	36.889
	SRR8316897	Juvenile bud stage	17.454
	SRR8316894	Third green stage	16.577
	SRR8316900	Third green stage	56.663
	SRR8316901	Third green stage	50.524
	SRR8316898	Complete white stage	44.587
	SRR8316899	Complete white stage	110.840
	SRR8316903	Complete white stage	54.835
	SRR8316902	Silver flowering stage	39.747
	SRR8316904	Silver flowering stage	58.751
	SRR8316905	Silver flowering stage	30.404
	SRR8316906	Gold flowering stage	77.802
	SRR8316907	Gold flowering stage	78.392
	SRR8316908	Gold flowering stage	88.185
SRP132670	SRR6706286	Control	47.904
	SRR6706287	Light intensity 50%	49.207
	SRR6706288	Light intensity 20%	53.599
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.090
	CNS0095593	Slightly white alabastrum(diploid) 2	45.439
	CNS0095594	Slightly white alabastrum(diploid) 3	38.571
	CNS0095595	Whole white alabastrum(diploid) 2	40.616
	CNS0095596	Whole white alabastrum(diploid) 3	37.468
	CNS0095597	Whole white alabastrum(diploid) 4	37.300
	CNS0095598	Silvery flower (diploied) 1	50.679
	CNS0095599	Silvery flower (diploied) 2	51.087
	CNS0095600	Silvery flower (diploied) 3	94.049
	CNS0095601	Golden flower (diploid) 1	49.197
	CNS0095602	Golden flower (diploid) 2	79.599
	CNS0095603	Golden flower (diploid) 3	70.818
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.191
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.101
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.841
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.008
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.185
	CNS0095610	Silvery flower (tetraploid) 1	86.156
	CNS0095611	Silvery flower (tetraploid) 2	82.653
	CNS0095612	Silvery flower (tetraploid) 3	94.573
	CNS0095613	Golden flower (tetraploid) 1	59.851
	CNS0095614	Golden flower (tetraploid) 2	70.564
	CNS0095615	Golden flower (tetraploid) 3	95.884
CRA001975	CRR073297	Stem 1	44.980
	CRR073298	Stem 2	46.325
	CRR073299	Stem 3	50.201
	CRR073300	Leaf 1	56.502
	CRR073301	Leaf 2	58.299
	CRR073302	Leaf 3	62.033
	CRR073303	Juvenile bud 1	75.455
	CRR073304	Juvenile bud 2	73.602
	CRR073305	Juvenile bud 3	83.125
	CRR073306	Third green 1	80.891
	CRR073307	Third green 2	83.724
	CRR073308	Third green 3	73.941
	CRR073309	Second white 1	86.353
	CRR073310	Second white 2	76.574
	CRR073311	Second white 3	62.436
	CRR073312	Silver flowering 1	54.943
	CRR073313	Silver flowering 2	67.732
	CRR073314	Silver flowering 3	47.009
	CRR073315	Gold flowering 1	33.377
	CRR073316	Gold flowering 2	43.087
	CRR073317	Gold flowering 3	35.420
	CRR073318	Tawny withering 1	59.420
	CRR073319	Tawny withering 2	56.728
	CRR073320	Tawny withering 3	53.469