Detail information of GWHGAAZE003554


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268346.10PREDICTED: signal peptide peptidase-like 1 [Vitis vinifera]
Swissprottr|Q93Z32|SIPL1_ARATH0Signal peptide peptidase-like 1
trEMBLtr|A5BNP3|A5BNP3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN83442.1}
TAIR10AT4G33410.12E-161SIGNAL PEPTIDE PEPTIDASE-LIKE 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100021158100023799+
GWHAAZE00000001mRNA100021158100023799+
GWHAAZE00000001exon100021158100021955+
GWHAAZE00000001exon100023321100023525+
GWHAAZE00000001exon100023660100023799+
GWHAAZE00000001CDS100021158100021955+
GWHAAZE00000001CDS100023321100023525+
GWHAAZE00000001CDS100023660100023799+
Transcript Sequence

Network for GWHGAAZE003554

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0041


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04258.14Peptidase_A22B493351.40E-62
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane
GO:0004190molecular_functionaspartic-type endopeptidase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE003554.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110120Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.311
SRR3591706second leaf20.839
SRR3591707mature leaf21.861
SRR3591708Shoot apex33.188
SRR3591709Stem46.685
SRR3591710White floral bud45.359
SRR3591711White flower49.591
SRR3591712Green floral bud39.255
SRR3591713Yellow flower42.128
SRP173429 SRR8316895Juvenile bud stage 28.560
SRR8316896Juvenile bud stage 36.889
SRR8316897Juvenile bud stage 17.454
SRR8316894Third green stage 16.577
SRR8316900Third green stage 56.663
SRR8316901Third green stage 50.524
SRR8316898Complete white stage 44.587
SRR8316899Complete white stage 110.840
SRR8316903Complete white stage 54.835
SRR8316902Silver flowering stage39.747
SRR8316904Silver flowering stage58.751
SRR8316905Silver flowering stage30.404
SRR8316906Gold flowering stage 77.802
SRR8316907Gold flowering stage 78.392
SRR8316908Gold flowering stage 88.185
SRP132670SRR6706286Control47.904
SRR6706287Light intensity 50%49.207
SRR6706288Light intensity 20%53.599
CNP0000432CNS0095592Slightly white alabastrum(diploid) 140.090
CNS0095593Slightly white alabastrum(diploid) 245.439
CNS0095594Slightly white alabastrum(diploid) 338.571
CNS0095595Whole white alabastrum(diploid) 240.616
CNS0095596Whole white alabastrum(diploid) 337.468
CNS0095597Whole white alabastrum(diploid) 437.300
CNS0095598Silvery flower (diploied) 150.679
CNS0095599Silvery flower (diploied) 251.087
CNS0095600Silvery flower (diploied) 394.049
CNS0095601Golden flower (diploid) 149.197
CNS0095602Golden flower (diploid) 279.599
CNS0095603Golden flower (diploid) 370.818
CNS0095604Slightly white alabastrum(tetraploid) 139.711
CNS0095605Slightly white alabastrum(tetraploid) 234.191
CNS0095606Slightly white alabastrum(tetraploid) 353.101
CNS0095607Whole white alabastrum(tetraploid) 124.841
CNS0095608Whole white alabastrum(tetraploid) 228.008
CNS0095609Whole white alabastrum(tetraploid) 343.185
CNS0095610Silvery flower (tetraploid) 186.156
CNS0095611Silvery flower (tetraploid) 282.653
CNS0095612Silvery flower (tetraploid) 394.573
CNS0095613Golden flower (tetraploid) 159.851
CNS0095614Golden flower (tetraploid) 270.564
CNS0095615Golden flower (tetraploid) 395.884
CRA001975CRR073297Stem 144.980
CRR073298Stem 246.325
CRR073299Stem 350.201
CRR073300Leaf 156.502
CRR073301Leaf 258.299
CRR073302Leaf 362.033
CRR073303Juvenile bud 175.455
CRR073304Juvenile bud 273.602
CRR073305Juvenile bud 383.125
CRR073306Third green 180.891
CRR073307Third green 283.724
CRR073308Third green 373.941
CRR073309Second white 186.353
CRR073310Second white 276.574
CRR073311Second white 362.436
CRR073312Silver flowering 154.943
CRR073313Silver flowering 267.732
CRR073314Silver flowering 347.009
CRR073315Gold flowering 133.377
CRR073316Gold flowering 243.087
CRR073317Gold flowering 335.420
CRR073318Tawny withering 159.420
CRR073319Tawny withering 256.728
CRR073320Tawny withering 353.469