Detail information of GWHGAAZE003556


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05185.16.76629E-38unnamed protein product [Coffea canephora]
Swissprottr|Q652P4|CPSF2_ORYSJ1E-32Cleavage and polyadenylation specificity factor subunit 2
trEMBLtr|A0A068U9I4|A0A068U9I4_COFCA3E-38Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313|EMBL:CDP05185.1}
TAIR10AT5G23880.15E-28cleavage and polyadenylation specificity factor 100

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100036543100037153+
GWHAAZE00000001mRNA100036543100037153+
GWHAAZE00000001exon100036543100036584+
GWHAAZE00000001exon100036712100036786+
GWHAAZE00000001exon100037055100037153+
GWHAAZE00000001CDS100036543100036584+
GWHAAZE00000001CDS100036712100036786+
GWHAAZE00000001CDS100037055100037153+
Transcript Sequence

Network for GWHGAAZE003556

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13299.7CPSF100_C1691.00E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14402CPSF2, CFT2 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.823
SRR3591706second leaf12.142
SRR3591707mature leaf8.880
SRR3591708Shoot apex16.235
SRR3591709Stem17.589
SRR3591710White floral bud25.903
SRR3591711White flower18.956
SRR3591712Green floral bud16.170
SRR3591713Yellow flower23.983
SRP173429 SRR8316895Juvenile bud stage 2.825
SRR8316896Juvenile bud stage 1.988
SRR8316897Juvenile bud stage 0.825
SRR8316894Third green stage 0.741
SRR8316900Third green stage 1.194
SRR8316901Third green stage 1.665
SRR8316898Complete white stage 0.205
SRR8316899Complete white stage 1.382
SRR8316903Complete white stage 0.237
SRR8316902Silver flowering stage0.906
SRR8316904Silver flowering stage0.166
SRR8316905Silver flowering stage0.564
SRR8316906Gold flowering stage 0.991
SRR8316907Gold flowering stage 1.501
SRR8316908Gold flowering stage 0.131
SRP132670SRR6706286Control0.539
SRR6706287Light intensity 50%0.973
SRR6706288Light intensity 20%0.734
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.688
CNS0095593Slightly white alabastrum(diploid) 22.257
CNS0095594Slightly white alabastrum(diploid) 36.828
CNS0095595Whole white alabastrum(diploid) 23.669
CNS0095596Whole white alabastrum(diploid) 32.157
CNS0095597Whole white alabastrum(diploid) 43.570
CNS0095598Silvery flower (diploied) 12.190
CNS0095599Silvery flower (diploied) 22.744
CNS0095600Silvery flower (diploied) 32.083
CNS0095601Golden flower (diploid) 13.038
CNS0095602Golden flower (diploid) 20.875
CNS0095603Golden flower (diploid) 30.289
CNS0095604Slightly white alabastrum(tetraploid) 13.195
CNS0095605Slightly white alabastrum(tetraploid) 21.441
CNS0095606Slightly white alabastrum(tetraploid) 33.794
CNS0095607Whole white alabastrum(tetraploid) 11.496
CNS0095608Whole white alabastrum(tetraploid) 21.987
CNS0095609Whole white alabastrum(tetraploid) 33.375
CNS0095610Silvery flower (tetraploid) 11.710
CNS0095611Silvery flower (tetraploid) 20.924
CNS0095612Silvery flower (tetraploid) 30.262
CNS0095613Golden flower (tetraploid) 11.791
CNS0095614Golden flower (tetraploid) 21.218
CNS0095615Golden flower (tetraploid) 30.963
CRA001975CRR073297Stem 11.640
CRR073298Stem 21.094
CRR073299Stem 30.092
CRR073300Leaf 10.208
CRR073301Leaf 20.805
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.955
CRR073305Juvenile bud 30.000
CRR073306Third green 10.096
CRR073307Third green 20.035
CRR073308Third green 30.949
CRR073309Second white 10.000
CRR073310Second white 20.198
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.198
CRR073314Silver flowering 30.386
CRR073315Gold flowering 11.223
CRR073316Gold flowering 20.461
CRR073317Gold flowering 30.086
CRR073318Tawny withering 10.515
CRR073319Tawny withering 20.421
CRR073320Tawny withering 30.899