Detail information of GWHGAAZE003559


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007051817.19.05364E-6360S ribosomal protein L36 isoform 1 [Theobroma cacao]
Swissprottr|Q9M352|RL362_ARATH2E-5560S ribosomal protein L36-2
trEMBLtr|A0A061DT49|A0A061DT49_THECC3E-6360S ribosomal protein L36 {ECO:0000256|RuleBase:RU000665}
TAIR10AT3G53740.41E-37Ribosomal protein L36e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100073962100075154-
GWHAAZE00000001mRNA100073962100075154-
GWHAAZE00000001exon100075053100075154-
GWHAAZE00000001exon100074688100074887-
GWHAAZE00000001exon100073962100074500-
GWHAAZE00000001CDS100075053100075154-
GWHAAZE00000001CDS100074688100074887-
GWHAAZE00000001CDS100074467100074500-
GWHAAZE00000001three_prime_UTR100073962100074466-
Transcript Sequence

Network for GWHGAAZE003559

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01158.19Ribosomal_L36e81011.40E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02920RP-L36e, RPL36 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf219.435
SRR3591706second leaf77.478
SRR3591707mature leaf51.416
SRR3591708Shoot apex268.619
SRR3591709Stem121.175
SRR3591710White floral bud105.839
SRR3591711White flower121.315
SRR3591712Green floral bud204.052
SRR3591713Yellow flower96.749
SRP173429 SRR8316895Juvenile bud stage 75.156
SRR8316896Juvenile bud stage 116.600
SRR8316897Juvenile bud stage 74.594
SRR8316894Third green stage 42.730
SRR8316900Third green stage 168.574
SRR8316901Third green stage 159.412
SRR8316898Complete white stage 22.179
SRR8316899Complete white stage 109.849
SRR8316903Complete white stage 38.272
SRR8316902Silver flowering stage15.364
SRR8316904Silver flowering stage12.110
SRR8316905Silver flowering stage8.603
SRR8316906Gold flowering stage 25.781
SRR8316907Gold flowering stage 29.337
SRR8316908Gold flowering stage 88.293
SRP132670SRR6706286Control185.652
SRR6706287Light intensity 50%176.520
SRR6706288Light intensity 20%183.375
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1202.057
CNS0095593Slightly white alabastrum(diploid) 2232.222
CNS0095594Slightly white alabastrum(diploid) 3202.453
CNS0095595Whole white alabastrum(diploid) 2199.115
CNS0095596Whole white alabastrum(diploid) 3235.301
CNS0095597Whole white alabastrum(diploid) 4168.908
CNS0095598Silvery flower (diploied) 164.775
CNS0095599Silvery flower (diploied) 261.642
CNS0095600Silvery flower (diploied) 334.762
CNS0095601Golden flower (diploid) 165.200
CNS0095602Golden flower (diploid) 232.993
CNS0095603Golden flower (diploid) 333.679
CNS0095604Slightly white alabastrum(tetraploid) 1205.126
CNS0095605Slightly white alabastrum(tetraploid) 2216.880
CNS0095606Slightly white alabastrum(tetraploid) 3245.881
CNS0095607Whole white alabastrum(tetraploid) 1164.447
CNS0095608Whole white alabastrum(tetraploid) 2155.768
CNS0095609Whole white alabastrum(tetraploid) 3222.224
CNS0095610Silvery flower (tetraploid) 1103.284
CNS0095611Silvery flower (tetraploid) 271.260
CNS0095612Silvery flower (tetraploid) 357.072
CNS0095613Golden flower (tetraploid) 186.202
CNS0095614Golden flower (tetraploid) 284.435
CNS0095615Golden flower (tetraploid) 339.976
CRA001975CRR073297Stem 190.684
CRR073298Stem 292.781
CRR073299Stem 384.994
CRR073300Leaf 196.395
CRR073301Leaf 299.068
CRR073302Leaf 392.773
CRR073303Juvenile bud 195.918
CRR073304Juvenile bud 255.523
CRR073305Juvenile bud 376.922
CRR073306Third green 112.113
CRR073307Third green 212.706
CRR073308Third green 313.694
CRR073309Second white 112.175
CRR073310Second white 210.111
CRR073311Second white 34.939
CRR073312Silver flowering 18.301
CRR073313Silver flowering 210.952
CRR073314Silver flowering 36.925
CRR073315Gold flowering 117.145
CRR073316Gold flowering 220.746
CRR073317Gold flowering 316.756
CRR073318Tawny withering 174.172
CRR073319Tawny withering 267.570
CRR073320Tawny withering 373.131