Gene detail

Detail information of GWHGAAZE003563

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272128.1	0	PREDICTED: uncharacterized protein LOC100262848 isoform X1 [Vitis vinifera]
trEMBL	tr\|E0CUZ7\|E0CUZ7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22697.3}
TAIR10	AT4G25610.1	1E-96	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100110064	100114279	+
GWHAAZE00000001	mRNA	100110064	100114279	+
GWHAAZE00000001	exon	100110064	100110244	+
GWHAAZE00000001	exon	100110586	100110722	+
GWHAAZE00000001	exon	100110822	100110866	+
GWHAAZE00000001	exon	100110940	100110993	+
GWHAAZE00000001	exon	100111335	100111439	+
GWHAAZE00000001	exon	100111569	100111775	+
GWHAAZE00000001	exon	100111945	100112030	+
GWHAAZE00000001	exon	100112407	100113470	+
GWHAAZE00000001	exon	100113580	100114279	+
GWHAAZE00000001	CDS	100110064	100110244	+
GWHAAZE00000001	CDS	100110586	100110722	+
GWHAAZE00000001	CDS	100110822	100110866	+
GWHAAZE00000001	CDS	100110940	100110993	+
GWHAAZE00000001	CDS	100111335	100111439	+
GWHAAZE00000001	CDS	100111569	100111775	+
GWHAAZE00000001	CDS	100111945	100112030	+
GWHAAZE00000001	CDS	100112407	100113470	+
GWHAAZE00000001	CDS	100113580	100113863	+
GWHAAZE00000001	three_prime_UTR	100113864	100114279	+

Transcript Sequence
>GWHTAAZE003569 ATGCCACTTGCAAAACTCAGAGCCAGTAGTACTCCAGATGCAATGAAATCAGAGGAAGGGAATGATTCCCTGGACACTTTCATAAGACAGGCAATTGGAAAAGAGCCCTTTTTTTCTTTCCCAAGGTCAGGGGACAGTCCTGTGCAGTGGATCCAATTACTTCATGCCTTAGATCAGCAAGATCTCCCTGGTTGGCCCTTGCTGACTCCTTTGAAGGTTCAGCTGCAGAAGTGTGAGAAGTGCTCTCGGGAATTTTGTTCACCCATCAACTACAGAAGACATATACGTGTGCATCGTCGATCTTTGAATGTTGATAAGGAGTCTCATAAAAACAGGAACTTATTGGGAGCATTTTGGGACAAGCTCCCTTTGGACGAGGCTAAGGAAATTGTATCATTCAGGGATGTTGCTCTGGAGGATGTTCCTGGATCTTCAATCATAAGGACATTGACAGCAACCATCCGCAAACCTGGGTTTTGTACGCTTCCTCAGGTTTATGTGAGAGCTGGCTCTGCCCTCTTGGATATCATCCAAGCTAGACCTTCCAAGATCCCAATATCCTCCCAGGAGCTATTCAGCATCCTCGATGATGCTAGTGAGAGAACATTTTTGTGTGCCGGTGCAGCTGAGTCGGTTCAAAAGTATGTTTTTGATGGGGAAGCTGGTAAGATTGGCCTCGAAATGAAGAACGTTGTTGCTTGCACCAGCTTCCTTGTTGAACAGAAACTGGTGAAAGCATGGCTTGCGGACAAAGATGCTGAAGCTTTAAGATGCCAGAAGTTGCTTGTGGAAGAGGAAGAAGCTGCTCAGAAAAGGCAAGCTGAGTTGTTGGAAAGGAAAAGACAGAGAAAGCTTAGACAGAAGGAACAGAAAGCAAGGGAACAGTCAAATGGAGAGAAGGCAGCAGGTATAATAAATGTCACTGCTGATACAGAAGAGAGTACTACTTCCCCTTCTGTAGAAACATCAAGCCCTTCAGCTCCATCCGAGGCCAATTCACAGGCTATGGATACATCAACAGATGATGTTTTCACACACCATGAACGTGTTCTTTTCTCCAAAAATGAAGATGAGGGCAACGAAGCTCATGGCGTATATTATACAGATGTGGGCAGTGATCAAAGTGTATATTATCCAGATGTGGGTGGTGATCAAAATGTTGAAACCCAAATGGAGCATGGGAATGGCCGTCGGCATTTAGTCATCACTCGATGGCAAGTGCCTAAAGCGCAAAAGGGCGGCCGCAATGGCTTTCATGCTAGTCAAAATCTTCGTATGTCGAAAGTTGAACCTGTGCACAAGCATGGACCCCACAGGGATCCAAGAGCTGCACCAGTTAATAGTAATAAAGTTTGGACCAAGAAACCTAAAGCAGATAATAATGGGGAGAGTGTTAAGAACAGGGTACTGAAAGAGACAATTAACCAGGCAGATCAAAGTAAGTGTGAAGTAATGATTGGTTCTATCTCTGTGATGGTGAGAAATTGTACCATCCAGCAACAAGAAGATAATTGTAGCATAAAGCATGCAAAACCCGAGAAAAATAACGTTCAGGAGAAATTAATAAAGCCTGATCCTGTTCATGCTCAGTGTGGCACAAACCGATCTATTGCCAAGTTTTGGAGGCCAGTTAGCCGTCAAGGAACAACGAGAGGTGGTCAAGTGGCAGTTCAAAGTGGCAATCATGAATCTGAAGACGATGTGATATTAGGAAAGGAAGATGATGAACGAGTAGTTCCATGTGAAAGCTCTGTCCGGTCATGTGGGATTGATGACAATGATAGTGAGAGTGGAAACAACTTCAATTCACCCTCAGAGGAAATTCCTAAGCAAGGGTTGCTGTTCTGCAGCTGTGCTGCAAAGGATTTTCTTGCACGGAGATGGAAAGAGGCTATCTCCGGGGAACATGTGAAATTGGTGTTGACCCCAGAACCTGTATATCCCGATGATGGACAGAATGAGTATCAAGTAGGAGCAGGACCAGCAGCAGCATCTTTGGATTTGCAGGAGCATAACATTCTTGGGAATGCAGAAAACAGGCTGGCTATGGTGGAGACTCTTGAGTCTTCAACAACTGGGATTGCTAAGCCCAATAAATTCAGAACAAAACCCGACAAAGGTGTTAAGATAAAGTACATTCCCAGACAGAGAACCGTTACCTAGGAGAATGATAGAGATGATATGATCAAAAGTTTAGTTGGTTATATTTCAATGTGCAGTTTTAACCCCCACCGCATTTAAAATTCTTAGCCAGAGGTTCCAGTTTTACCAGTGGTCTTCTGTCAGAAAAATTGAAGCAAGTTTTTTCAGGAAGAGATATTATAGTTCCATCCTTTTTCTCCTTTGACTTTTGGGTAGAGGATTTTTGGGCAGTCAATGCTTTTCTTCGTCTAGATTCTTTCTTTTTCCCCTCGGGTAATAAATTGGGTTTTCTATGTTATTGTTTTTGCTTTCTCTGTCTGCCTTCCTTTTCCCAATCAGAATATGAATGTATGATCCAATCAAGTTGGTCTTGATTGTTTTCGGAGCAGTTGAATTTCTTTTTTGATAAATTTTGGTGGCAAGTTCAATATTATTGT

Network for GWHGAAZE003563

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0018

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.899
	SRR3591706	second leaf	7.144
	SRR3591707	mature leaf	8.018
	SRR3591708	Shoot apex	11.622
	SRR3591709	Stem	21.478
	SRR3591710	White floral bud	18.243
	SRR3591711	White flower	19.640
	SRR3591712	Green floral bud	24.630
	SRR3591713	Yellow flower	16.399
SRP173429	SRR8316895	Juvenile bud stage	10.482
	SRR8316896	Juvenile bud stage	21.351
	SRR8316897	Juvenile bud stage	9.556
	SRR8316894	Third green stage	10.260
	SRR8316900	Third green stage	28.378
	SRR8316901	Third green stage	28.064
	SRR8316898	Complete white stage	10.296
	SRR8316899	Complete white stage	24.168
	SRR8316903	Complete white stage	17.413
	SRR8316902	Silver flowering stage	9.556
	SRR8316904	Silver flowering stage	13.947
	SRR8316905	Silver flowering stage	6.125
	SRR8316906	Gold flowering stage	16.723
	SRR8316907	Gold flowering stage	18.027
	SRR8316908	Gold flowering stage	23.913
SRP132670	SRR6706286	Control	18.742
	SRR6706287	Light intensity 50%	18.931
	SRR6706288	Light intensity 20%	20.495
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.970
	CNS0095593	Slightly white alabastrum(diploid) 2	20.819
	CNS0095594	Slightly white alabastrum(diploid) 3	21.590
	CNS0095595	Whole white alabastrum(diploid) 2	19.616
	CNS0095596	Whole white alabastrum(diploid) 3	22.430
	CNS0095597	Whole white alabastrum(diploid) 4	22.499
	CNS0095598	Silvery flower (diploied) 1	12.791
	CNS0095599	Silvery flower (diploied) 2	10.203
	CNS0095600	Silvery flower (diploied) 3	21.840
	CNS0095601	Golden flower (diploid) 1	8.830
	CNS0095602	Golden flower (diploid) 2	15.891
	CNS0095603	Golden flower (diploid) 3	16.036
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.071
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.622
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.547
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.968
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.227
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.972
	CNS0095610	Silvery flower (tetraploid) 1	23.252
	CNS0095611	Silvery flower (tetraploid) 2	17.277
	CNS0095612	Silvery flower (tetraploid) 3	18.247
	CNS0095613	Golden flower (tetraploid) 1	14.991
	CNS0095614	Golden flower (tetraploid) 2	21.041
	CNS0095615	Golden flower (tetraploid) 3	18.700
CRA001975	CRR073297	Stem 1	18.903
	CRR073298	Stem 2	17.252
	CRR073299	Stem 3	13.228
	CRR073300	Leaf 1	23.611
	CRR073301	Leaf 2	23.051
	CRR073302	Leaf 3	13.382
	CRR073303	Juvenile bud 1	16.228
	CRR073304	Juvenile bud 2	15.684
	CRR073305	Juvenile bud 3	19.665
	CRR073306	Third green 1	9.859
	CRR073307	Third green 2	7.399
	CRR073308	Third green 3	10.289
	CRR073309	Second white 1	8.941
	CRR073310	Second white 2	10.197
	CRR073311	Second white 3	9.765
	CRR073312	Silver flowering 1	10.972
	CRR073313	Silver flowering 2	10.973
	CRR073314	Silver flowering 3	8.193
	CRR073315	Gold flowering 1	3.290
	CRR073316	Gold flowering 2	2.627
	CRR073317	Gold flowering 3	1.969
	CRR073318	Tawny withering 1	14.637
	CRR073319	Tawny withering 2	11.407
	CRR073320	Tawny withering 3	15.277