Detail information of GWHGAAZE003565


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009758254.10PREDICTED: SKP1-like protein 21 isoform X1 [Nicotiana sylvestris]
Swissprottr|Q8LF97|ASK21_ARATH5E-151SKP1-like protein 21
trEMBLtr|M1CXM6|M1CXM6_SOLTU2E-177Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076942}
TAIR10AT3G61415.24E-106SKP1-like 21

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100150305100154083-
GWHAAZE00000001mRNA100150305100154083-
GWHAAZE00000001exon100154048100154083-
GWHAAZE00000001exon100153100100153363-
GWHAAZE00000001exon100152649100152840-
GWHAAZE00000001exon100152459100152569-
GWHAAZE00000001exon100151395100151473-
GWHAAZE00000001exon100151034100151137-
GWHAAZE00000001exon100150724100150863-
GWHAAZE00000001exon100150305100150434-
GWHAAZE00000001CDS100154048100154083-
GWHAAZE00000001CDS100153100100153363-
GWHAAZE00000001CDS100152649100152840-
GWHAAZE00000001CDS100152459100152569-
GWHAAZE00000001CDS100151395100151473-
GWHAAZE00000001CDS100151034100151137-
GWHAAZE00000001CDS100150724100150863-
GWHAAZE00000001CDS100150305100150434-
Transcript Sequence

Network for GWHGAAZE003565

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01466.20Skp11311687.50E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.147
SRR3591706second leaf8.635
SRR3591707mature leaf13.105
SRR3591708Shoot apex14.310
SRR3591709Stem14.203
SRR3591710White floral bud12.026
SRR3591711White flower16.660
SRR3591712Green floral bud11.023
SRR3591713Yellow flower12.735
SRP173429 SRR8316895Juvenile bud stage 10.082
SRR8316896Juvenile bud stage 11.235
SRR8316897Juvenile bud stage 4.699
SRR8316894Third green stage 5.258
SRR8316900Third green stage 10.844
SRR8316901Third green stage 9.515
SRR8316898Complete white stage 3.814
SRR8316899Complete white stage 12.754
SRR8316903Complete white stage 8.294
SRR8316902Silver flowering stage5.273
SRR8316904Silver flowering stage7.897
SRR8316905Silver flowering stage2.980
SRR8316906Gold flowering stage 7.499
SRR8316907Gold flowering stage 8.950
SRR8316908Gold flowering stage 8.481
SRP132670SRR6706286Control6.905
SRR6706287Light intensity 50%6.980
SRR6706288Light intensity 20%6.862
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.119
CNS0095593Slightly white alabastrum(diploid) 28.183
CNS0095594Slightly white alabastrum(diploid) 38.393
CNS0095595Whole white alabastrum(diploid) 27.652
CNS0095596Whole white alabastrum(diploid) 35.531
CNS0095597Whole white alabastrum(diploid) 47.247
CNS0095598Silvery flower (diploied) 115.802
CNS0095599Silvery flower (diploied) 29.993
CNS0095600Silvery flower (diploied) 37.343
CNS0095601Golden flower (diploid) 110.379
CNS0095602Golden flower (diploid) 26.345
CNS0095603Golden flower (diploid) 37.249
CNS0095604Slightly white alabastrum(tetraploid) 18.318
CNS0095605Slightly white alabastrum(tetraploid) 28.838
CNS0095606Slightly white alabastrum(tetraploid) 311.764
CNS0095607Whole white alabastrum(tetraploid) 18.109
CNS0095608Whole white alabastrum(tetraploid) 24.841
CNS0095609Whole white alabastrum(tetraploid) 37.955
CNS0095610Silvery flower (tetraploid) 115.061
CNS0095611Silvery flower (tetraploid) 29.468
CNS0095612Silvery flower (tetraploid) 310.447
CNS0095613Golden flower (tetraploid) 15.373
CNS0095614Golden flower (tetraploid) 29.557
CNS0095615Golden flower (tetraploid) 35.174
CRA001975CRR073297Stem 16.910
CRR073298Stem 26.091
CRR073299Stem 32.486
CRR073300Leaf 14.133
CRR073301Leaf 23.203
CRR073302Leaf 31.817
CRR073303Juvenile bud 12.132
CRR073304Juvenile bud 21.114
CRR073305Juvenile bud 32.360
CRR073306Third green 10.477
CRR073307Third green 20.334
CRR073308Third green 30.589
CRR073309Second white 10.319
CRR073310Second white 20.264
CRR073311Second white 30.425
CRR073312Silver flowering 10.158
CRR073313Silver flowering 20.558
CRR073314Silver flowering 30.282
CRR073315Gold flowering 13.051
CRR073316Gold flowering 25.259
CRR073317Gold flowering 31.172
CRR073318Tawny withering 13.030
CRR073319Tawny withering 23.249
CRR073320Tawny withering 33.654