Gene detail

Detail information of GWHGAAZE003574

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011030164.1	9.2243E-138	PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like isoform X1 [Populus euphratica]
COG	YP_004780912.1	1E-65	fibrillarin
Swissprot	tr\|Q94AH9\|MD36A_ARATH	2E-136	Mediator of RNA polymerase II transcription subunit 36a
trEMBL	tr\|B9I464\|B9I464_POPTR	4E-138	Uncharacterized protein {ECO:0000313\|EMBL:EEE97023.2}
TAIR10	AT4G25630.1	1E-107	fibrillarin 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100296584	100299145	+
GWHAAZE00000001	mRNA	100296584	100299145	+
GWHAAZE00000001	exon	100296584	100296605	+
GWHAAZE00000001	exon	100296753	100297156	+
GWHAAZE00000001	exon	100297312	100297413	+
GWHAAZE00000001	exon	100297952	100298029	+
GWHAAZE00000001	exon	100298126	100298302	+
GWHAAZE00000001	exon	100298421	100298489	+
GWHAAZE00000001	exon	100298684	100299145	+
GWHAAZE00000001	CDS	100296584	100296605	+
GWHAAZE00000001	CDS	100296753	100297156	+
GWHAAZE00000001	CDS	100297312	100297413	+
GWHAAZE00000001	CDS	100297952	100298029	+
GWHAAZE00000001	CDS	100298126	100298302	+
GWHAAZE00000001	CDS	100298421	100298489	+
GWHAAZE00000001	CDS	100298684	100298866	+
GWHAAZE00000001	three_prime_UTR	100298867	100299145	+

Transcript Sequence
>GWHTAAZE003580 ATGAGACCACCTTTAACTAGAGGCCGTCGTGGTGGTGGTGGTCGTGGCAGCGGTCGTGGCGGTAGAGGAGGCTATGGTGGAAGAGACTGGGATACAGGTGGAGGCAGGGGAGGTTTTAGCAGAGGAAGAGGCAGAGGTGGTGGCAGTGCCATAAAATGCGGCGGAGGAAGTGCAAGGGGTGGAGGTAGGGGCCGAGGCGGTGGAGGTAGGGGTAGAGGCGGTGGAGGAAGGGGTAGAGGCGGTGGCGGCCGGGGAAGAGGTGGAGGAGGAACGAAGGGAGGAATAAAGGGAGGAAAGAAATTTACGGTTGAGGCTCATAGACACGAGGGAGTGTTCGTTGTTAAGGGGGCAGGGCAAGATGCCATTTGTACCAAGAATATGAATCCCGGCGAATCTGTTTATAATGAGAAGAAAATCTCTGTTCAGAATGAAGCAGGAGATGGAACAAAGGTAGAATATAGGGTATGGAATCCCTTCCGTTCTAAGTTGGCAGCAGCTATTCTTGGTGGTATAGAGGATATCCACATGAAACCAGGTGCTCGGGTCCTTTACCTAGGAGCTGCTTCGGGAACCACTGTTTCTCATGTGTCTGATCTTATTGGCCCCACGGGAGTGGTATATGCAGTTGAATTTTCTCACAGAAGTGGACGGGATTTGGTGAACATGTCAAAGAAGAGAACTAATGTTGTACCTATTATTGAAGACGCTAGACATCCTGCCAAGTACCGCATTCTTGTCGGCATGGTTGATGTCATATTTTCTGACGTTGCTCAGCCTGATCAGGCAAGGATTATAGGGCTGAATGCATCATATTTCTTGAAAGTTGGAGGCCATGTTGTTATGTCAATCAAGGCGAGCTGCATAGATTCAACTGCTCCAGCCGAGGCTGTGTTTGCCCACGAAGTGAATATCCTAAGACAAGAACAAATCAAGCTCATTGAACAAATCACTCTTGAACCTTTTGAGCGCAACCATACTTGTGTGGTTGGCCAATACCGCGTGTCCAAGAAACAGAATGTTACGCCCCTACCCTAGTAAATGCATGCTAGACTTCATTTTCCCTTTCAATTTTGACAACCTTAGAGTATTATCATAATTTTATTTTCACACTCGGCTCATTTATGCAATTGTAACCTTAAATCCAACTTTTCCTCCAAATATTTAACTATTGTTTTTTTTTTACTTTTGTCCTTCCAAATCTGGAATTAGTCATGAGATTTAGTACTCCATCTTGGCCAAAGGTACACCGTTGTTATTTGCGATGTCTGAATCATATTGGAAACTTCTATATGCATTTATAGAATTGCATTTTTT

Network for GWHGAAZE003574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01269.18	Fibrillarin	104	333	1.50E-105

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14563	NOP1, FBL	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0003723	molecular_function	RNA binding
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.211
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.169
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.278
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.604
	SRR3591713	Yellow flower	0.096
SRP173429	SRR8316895	Juvenile bud stage	6.700
	SRR8316896	Juvenile bud stage	12.391
	SRR8316897	Juvenile bud stage	2.189
	SRR8316894	Third green stage	2.236
	SRR8316900	Third green stage	2.185
	SRR8316901	Third green stage	2.752
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.019
	SRR8316904	Silver flowering stage	0.052
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.772
	SRR6706287	Light intensity 50%	0.806
	SRR6706288	Light intensity 20%	0.782
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.898
	CNS0095593	Slightly white alabastrum(diploid) 2	2.619
	CNS0095594	Slightly white alabastrum(diploid) 3	7.446
	CNS0095595	Whole white alabastrum(diploid) 2	4.381
	CNS0095596	Whole white alabastrum(diploid) 3	5.390
	CNS0095597	Whole white alabastrum(diploid) 4	5.258
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.202
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.383
	CNS0095602	Golden flower (diploid) 2	0.074
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.417
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.344
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.016
	CNS0095610	Silvery flower (tetraploid) 1	0.075
	CNS0095611	Silvery flower (tetraploid) 2	0.090
	CNS0095612	Silvery flower (tetraploid) 3	0.636
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.082
CRA001975	CRR073297	Stem 1	3.760
	CRR073298	Stem 2	2.992
	CRR073299	Stem 3	1.995
	CRR073300	Leaf 1	1.498
	CRR073301	Leaf 2	1.754
	CRR073302	Leaf 3	1.610
	CRR073303	Juvenile bud 1	1.194
	CRR073304	Juvenile bud 2	0.793
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.060
	CRR073307	Third green 2	0.030
	CRR073308	Third green 3	0.064
	CRR073309	Second white 1	0.028
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.002
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.281
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.042
	CRR073320	Tawny withering 3	0.203