Detail information of GWHGAAZE003577


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787242.11.7352E-145PREDICTED: scarecrow-like protein 8 [Nicotiana sylvestris]
Swissprottr|Q9FYR7|SCL8_ARATH2E-104Scarecrow-like protein 8
trEMBLtr|A0A075F2G5|A0A075F2G5_TOBAC2E-145GRAS10 protein {ECO:0000313|EMBL:AIE54282.1}
TAIR10AT5G52510.15E-88SCARECROW-like 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100371022100371855+
GWHAAZE00000001mRNA100371022100371855+
GWHAAZE00000001exon100371022100371855+
GWHAAZE00000001CDS100371022100371855+
Transcript Sequence

Network for GWHGAAZE003577

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS12774.10E-86
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf99.221
SRR3591706second leaf40.810
SRR3591707mature leaf64.069
SRR3591708Shoot apex37.790
SRR3591709Stem129.517
SRR3591710White floral bud172.316
SRR3591711White flower297.983
SRR3591712Green floral bud67.443
SRR3591713Yellow flower227.086
SRP173429 SRR8316895Juvenile bud stage 121.801
SRR8316896Juvenile bud stage 153.676
SRR8316897Juvenile bud stage 80.089
SRR8316894Third green stage 25.221
SRR8316900Third green stage 55.167
SRR8316901Third green stage 82.952
SRR8316898Complete white stage 71.885
SRR8316899Complete white stage 153.850
SRR8316903Complete white stage 122.257
SRR8316902Silver flowering stage102.212
SRR8316904Silver flowering stage111.399
SRR8316905Silver flowering stage62.042
SRR8316906Gold flowering stage 218.685
SRR8316907Gold flowering stage 242.166
SRR8316908Gold flowering stage 235.893
SRP132670SRR6706286Control93.624
SRR6706287Light intensity 50%95.772
SRR6706288Light intensity 20%85.926
CNP0000432CNS0095592Slightly white alabastrum(diploid) 196.921
CNS0095593Slightly white alabastrum(diploid) 2109.820
CNS0095594Slightly white alabastrum(diploid) 3123.078
CNS0095595Whole white alabastrum(diploid) 299.035
CNS0095596Whole white alabastrum(diploid) 336.939
CNS0095597Whole white alabastrum(diploid) 474.991
CNS0095598Silvery flower (diploied) 1235.113
CNS0095599Silvery flower (diploied) 2212.801
CNS0095600Silvery flower (diploied) 3311.452
CNS0095601Golden flower (diploid) 1217.525
CNS0095602Golden flower (diploid) 2354.451
CNS0095603Golden flower (diploid) 3351.095
CNS0095604Slightly white alabastrum(tetraploid) 159.365
CNS0095605Slightly white alabastrum(tetraploid) 247.070
CNS0095606Slightly white alabastrum(tetraploid) 3120.920
CNS0095607Whole white alabastrum(tetraploid) 143.921
CNS0095608Whole white alabastrum(tetraploid) 230.055
CNS0095609Whole white alabastrum(tetraploid) 362.700
CNS0095610Silvery flower (tetraploid) 1325.925
CNS0095611Silvery flower (tetraploid) 2280.106
CNS0095612Silvery flower (tetraploid) 3265.128
CNS0095613Golden flower (tetraploid) 1381.518
CNS0095614Golden flower (tetraploid) 2365.449
CNS0095615Golden flower (tetraploid) 3369.604
CRA001975CRR073297Stem 1107.820
CRR073298Stem 2109.117
CRR073299Stem 3119.152
CRR073300Leaf 1158.421
CRR073301Leaf 2208.600
CRR073302Leaf 3117.431
CRR073303Juvenile bud 1165.139
CRR073304Juvenile bud 2190.152
CRR073305Juvenile bud 3314.062
CRR073306Third green 1515.297
CRR073307Third green 2425.616
CRR073308Third green 3462.552
CRR073309Second white 1860.262
CRR073310Second white 2599.004
CRR073311Second white 3662.003
CRR073312Silver flowering 1945.022
CRR073313Silver flowering 21196.479
CRR073314Silver flowering 3927.748
CRR073315Gold flowering 174.656
CRR073316Gold flowering 2116.173
CRR073317Gold flowering 3103.564
CRR073318Tawny withering 1131.578
CRR073319Tawny withering 2200.382
CRR073320Tawny withering 3140.042