Gene detail

Detail information of GWHGAAZE003578

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011084448.1	PREDICTED: proline--tRNA ligase [Sesamum indicum]
COG	YP_004861552.1	prolyl-tRNA synthetase
trEMBL	tr\|A0A067JQI8\|A0A067JQI8_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP22240.1}
TAIR10	AT5G52520.1	Class II aaRS and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100385177	100389977	+
GWHAAZE00000001	mRNA	100385177	100389977	+
GWHAAZE00000001	exon	100385177	100385529	+
GWHAAZE00000001	exon	100385654	100385710	+
GWHAAZE00000001	exon	100387098	100387208	+
GWHAAZE00000001	exon	100387388	100387474	+
GWHAAZE00000001	exon	100387566	100387679	+
GWHAAZE00000001	exon	100387769	100387975	+
GWHAAZE00000001	exon	100388096	100388233	+
GWHAAZE00000001	exon	100388455	100388616	+
GWHAAZE00000001	exon	100388795	100388994	+
GWHAAZE00000001	exon	100389641	100389724	+
GWHAAZE00000001	exon	100389836	100389977	+
GWHAAZE00000001	five_prime_UTR	100385177	100385205	+
GWHAAZE00000001	CDS	100385206	100385529	+
GWHAAZE00000001	CDS	100385654	100385710	+
GWHAAZE00000001	CDS	100387098	100387208	+
GWHAAZE00000001	CDS	100387388	100387474	+
GWHAAZE00000001	CDS	100387566	100387679	+
GWHAAZE00000001	CDS	100387769	100387975	+
GWHAAZE00000001	CDS	100388096	100388233	+
GWHAAZE00000001	CDS	100388455	100388616	+
GWHAAZE00000001	CDS	100388795	100388994	+
GWHAAZE00000001	CDS	100389641	100389724	+
GWHAAZE00000001	CDS	100389836	100389977	+

Transcript Sequence
>GWHTAAZE003584 CTCCCTATCTCTTGTTCAGTACACCAGATATGGGGGCCATCAGACTGCCCTCTATTACCTCTATGTTTGCCGCCTCCTCCGCCGCCCGTTCTACCTTTCTTATCCGCCGGAACCACCCGCTCCGCTTCCCTCTACGGAGGCTCTCAGCCGCCAATATCTATGCCGCCGAGAAAGATATTTCGCGGGAGACTGACAAGGCCAAAGTACAGGACCGGTCCATAACCCCCAGGTCTCAGGATTTCAATGCTTGGTACTTAGACGTAATTGCAAACGCCGAGTTATCTGATTATGGTCCAGTTCGGGGTACTATGGTAATTCGACCTTATGGTTACGCTATCTGGGAAGCAATCCAGGATTATTTGAACATTAAATTCAAGGAGACTGGTCATAGTAACATGTACTTCCCACAGTTCATACCATATTCCTTCATAGAAAAAGAAGCGAGCCATGTTGAGGGTTTTAGTCCAGAATTAGCACTTGTAACTATTGGAGGAGGGAAGGAACTTGAAGAAAAACTTGTGGTTCGACCTACTAGTGAAACCATTGTGAATCACATGTTTACGCAGTGGATTCATAGTTACCGTGATCTTCCTCTTATGATCAACCAGTGGGCAAACGTAACAAGATGGGAGATGCGCACTAAACCATTTGTGAGGACTCTTGAATTTCTCTGGCAAGAGGGACATACGGCACATGCCACTCCAGAAGAAGCAGAAAAAGAGGCACGACAGATGATTGATGTGTATACGAAATTTGCTTATGAGGAAGCTGCAATGCCTGTTATTGCAGGTCGAAAATCAAGGGTGGAGACATTTGCTGGTGCTTCCATGACTTATACTATCGAAGCTATGATGGGTGATTGTAAGGCCTTGCAGGCTGGAACAAGCCACAACCTTGGGCAGAACTTCTCTCGTGCTTTTGGAACACAGTTCACTAATGAAACTGGAGAAAGGCAACATGTATGGCAGACGTCATGGGCGATAAGCACCCGTTTCATTGGTGGTATTATCATGACCCATGGGGATGATATTGGTTTAATGCTTCCCCCTAGGTTGGCTCCTATACAGGTGGTAATTGTCCCAATTTGGAAGAAGCCTGATGAGAAGATGGGAGTTCTTAATGCTACCTTATCGGTCAAAGATGTTTTGCAAAGTGCAGGGTTTAAAGTCAAGATTGATGACTCAGATCAGAGAACACCTGGATGGAAATTCAATTTCTGGGAAATGAAGGGAGTCCCTCTAAGGATTGAAATTGGTCCTCGTGACGTTTCTAGTGGAAGTGTGGTGATATCCAGAAGAGATATACCTGGAAAGCAAGGGAAAGTTTTTGGAATATCTATGGAACCTTTGATTTTGGTAGCTTGTGTTAAAGACAAGTTGGACGAGATTCAATCCTCATTTCTGGCTAGGGCAACATCATTTCGAGATAGTAACATTGTGGACGTGAGCTCGTATGATGAACTGAAAGAGGCAGTTTCTCAGGGCAAATGGGCAAGGGGTCCTTGGTCTGCTAGTGATGAAGACGAATTAAAAGTCAAACAAGAAACTAGCGCAACAATTAGATGTTTCCCATTTGAACAGCCTCAAGGAACCAAGAAATGCCTGATGACTGGCAATCCAGCAGAGGAAGTTGCAATTTTCGCCAAATCTTACTAG

Network for GWHGAAZE003578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00587.26	tRNA-synt_2b	158	327	1.90E-19
PF03129.21	HGTP_anticodon	346	424	1.10E-14
PF09180.12	ProRS-C_1	475	541	3.50E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01881	PARS, proS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006433	biological_process	prolyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0004827	molecular_function	proline-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.010
	SRR3591706	second leaf	40.585
	SRR3591707	mature leaf	31.222
	SRR3591708	Shoot apex	35.159
	SRR3591709	Stem	16.312
	SRR3591710	White floral bud	21.516
	SRR3591711	White flower	24.708
	SRR3591712	Green floral bud	23.523
	SRR3591713	Yellow flower	23.855
SRP173429	SRR8316895	Juvenile bud stage	14.787
	SRR8316896	Juvenile bud stage	17.163
	SRR8316897	Juvenile bud stage	8.505
	SRR8316894	Third green stage	7.932
	SRR8316900	Third green stage	27.505
	SRR8316901	Third green stage	23.167
	SRR8316898	Complete white stage	7.747
	SRR8316899	Complete white stage	26.341
	SRR8316903	Complete white stage	8.988
	SRR8316902	Silver flowering stage	7.714
	SRR8316904	Silver flowering stage	7.651
	SRR8316905	Silver flowering stage	4.230
	SRR8316906	Gold flowering stage	18.480
	SRR8316907	Gold flowering stage	16.999
	SRR8316908	Gold flowering stage	20.919
SRP132670	SRR6706286	Control	15.827
	SRR6706287	Light intensity 50%	16.084
	SRR6706288	Light intensity 20%	18.592
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.832
	CNS0095593	Slightly white alabastrum(diploid) 2	13.300
	CNS0095594	Slightly white alabastrum(diploid) 3	13.670
	CNS0095595	Whole white alabastrum(diploid) 2	15.710
	CNS0095596	Whole white alabastrum(diploid) 3	15.071
	CNS0095597	Whole white alabastrum(diploid) 4	10.298
	CNS0095598	Silvery flower (diploied) 1	15.814
	CNS0095599	Silvery flower (diploied) 2	11.551
	CNS0095600	Silvery flower (diploied) 3	22.767
	CNS0095601	Golden flower (diploid) 1	14.360
	CNS0095602	Golden flower (diploid) 2	21.245
	CNS0095603	Golden flower (diploid) 3	20.760
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.949
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.720
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.779
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.613
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.628
	CNS0095610	Silvery flower (tetraploid) 1	27.665
	CNS0095611	Silvery flower (tetraploid) 2	33.354
	CNS0095612	Silvery flower (tetraploid) 3	31.606
	CNS0095613	Golden flower (tetraploid) 1	17.860
	CNS0095614	Golden flower (tetraploid) 2	29.603
	CNS0095615	Golden flower (tetraploid) 3	20.893
CRA001975	CRR073297	Stem 1	19.538
	CRR073298	Stem 2	19.980
	CRR073299	Stem 3	15.410
	CRR073300	Leaf 1	17.774
	CRR073301	Leaf 2	15.531
	CRR073302	Leaf 3	18.747
	CRR073303	Juvenile bud 1	14.307
	CRR073304	Juvenile bud 2	16.033
	CRR073305	Juvenile bud 3	17.604
	CRR073306	Third green 1	5.070
	CRR073307	Third green 2	3.503
	CRR073308	Third green 3	4.923
	CRR073309	Second white 1	10.204
	CRR073310	Second white 2	10.370
	CRR073311	Second white 3	9.995
	CRR073312	Silver flowering 1	10.280
	CRR073313	Silver flowering 2	12.656
	CRR073314	Silver flowering 3	8.343
	CRR073315	Gold flowering 1	28.362
	CRR073316	Gold flowering 2	44.211
	CRR073317	Gold flowering 3	28.534
	CRR073318	Tawny withering 1	10.457
	CRR073319	Tawny withering 2	10.996
	CRR073320	Tawny withering 3	10.714