Detail information of GWHGAAZE003586


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273581.12.2264E-168PREDICTED: beta-carotene hydroxylase 2, chloroplastic [Vitis vinifera]
COGYP_008147268.11E-29hypothetical protein SCE1572_04045
Swissprottr|O49815|BCH1_CAPAN2E-149Beta-carotene hydroxylase 1, chloroplastic (Precursor)
trEMBLtr|F6H6C8|F6H6C8_VITVI8E-169Putative uncharacterized protein {ECO:0000313|EMBL:CCB47839.1}
TAIR10AT5G52570.15E-102beta-carotene hydroxylase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100480496100483995-
GWHAAZE00000001mRNA100480496100483995-
GWHAAZE00000001exon100480496100480579-
GWHAAZE00000001exon100480738100480794-
GWHAAZE00000001exon100481055100481222-
GWHAAZE00000001exon100482564100482698-
GWHAAZE00000001exon100483012100483083-
GWHAAZE00000001exon100483234100483293-
GWHAAZE00000001exon100483378100483995-
GWHAAZE00000001CDS100483378100483995-
GWHAAZE00000001CDS100483234100483293-
GWHAAZE00000001CDS100483012100483083-
GWHAAZE00000001CDS100482564100482698-
GWHAAZE00000001CDS100481055100481222-
GWHAAZE00000001CDS100480738100480794-
GWHAAZE00000001CDS100480496100480579-
Transcript Sequence

Network for GWHGAAZE003586

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15746crtZ Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf61.623
SRR3591706second leaf202.509
SRR3591707mature leaf61.196
SRR3591708Shoot apex92.986
SRR3591709Stem84.492
SRR3591710White floral bud583.048
SRR3591711White flower1280.153
SRR3591712Green floral bud153.460
SRR3591713Yellow flower1748.727
SRP173429 SRR8316895Juvenile bud stage 98.388
SRR8316896Juvenile bud stage 119.600
SRR8316897Juvenile bud stage 93.993
SRR8316894Third green stage 35.984
SRR8316900Third green stage 124.973
SRR8316901Third green stage 148.652
SRR8316898Complete white stage 274.460
SRR8316899Complete white stage 221.827
SRR8316903Complete white stage 417.694
SRR8316902Silver flowering stage349.733
SRR8316904Silver flowering stage335.840
SRR8316905Silver flowering stage182.014
SRR8316906Gold flowering stage 537.152
SRR8316907Gold flowering stage 607.990
SRR8316908Gold flowering stage 623.637
SRP132670SRR6706286Control165.674
SRR6706287Light intensity 50%182.453
SRR6706288Light intensity 20%167.395
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1115.298
CNS0095593Slightly white alabastrum(diploid) 2131.830
CNS0095594Slightly white alabastrum(diploid) 3125.470
CNS0095595Whole white alabastrum(diploid) 2123.253
CNS0095596Whole white alabastrum(diploid) 388.070
CNS0095597Whole white alabastrum(diploid) 490.600
CNS0095598Silvery flower (diploied) 1263.989
CNS0095599Silvery flower (diploied) 2298.578
CNS0095600Silvery flower (diploied) 3591.004
CNS0095601Golden flower (diploid) 1321.025
CNS0095602Golden flower (diploid) 2571.148
CNS0095603Golden flower (diploid) 3564.704
CNS0095604Slightly white alabastrum(tetraploid) 173.605
CNS0095605Slightly white alabastrum(tetraploid) 263.990
CNS0095606Slightly white alabastrum(tetraploid) 3100.029
CNS0095607Whole white alabastrum(tetraploid) 138.859
CNS0095608Whole white alabastrum(tetraploid) 249.165
CNS0095609Whole white alabastrum(tetraploid) 3121.100
CNS0095610Silvery flower (tetraploid) 1477.419
CNS0095611Silvery flower (tetraploid) 2517.373
CNS0095612Silvery flower (tetraploid) 3428.119
CNS0095613Golden flower (tetraploid) 1581.415
CNS0095614Golden flower (tetraploid) 2406.705
CNS0095615Golden flower (tetraploid) 3887.221
CRA001975CRR073297Stem 191.293
CRR073298Stem 287.340
CRR073299Stem 3101.171
CRR073300Leaf 1113.417
CRR073301Leaf 2125.875
CRR073302Leaf 3136.683
CRR073303Juvenile bud 1142.822
CRR073304Juvenile bud 2203.802
CRR073305Juvenile bud 3142.691
CRR073306Third green 1692.647
CRR073307Third green 2543.708
CRR073308Third green 3494.051
CRR073309Second white 1727.808
CRR073310Second white 2538.453
CRR073311Second white 3588.341
CRR073312Silver flowering 11121.549
CRR073313Silver flowering 21296.820
CRR073314Silver flowering 31040.314
CRR073315Gold flowering 1121.291
CRR073316Gold flowering 2106.489
CRR073317Gold flowering 399.836
CRR073318Tawny withering 163.169
CRR073319Tawny withering 276.709
CRR073320Tawny withering 338.346