Detail information of GWHGAAZE003596


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG27836.10DnaJ subfamily C member 16 [Gossypium arboreum]
COGYP_003408731.13E-14chaperone protein DnaJ
Swissprottr|Q0WT48|DNJ21_ARATH0DnaJ protein ERDJ2A
trEMBLtr|F6H6A8|F6H6A8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47819.1}
TAIR10AT1G79940.30DnaJ / Sec63 Brl domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene100664579100672681-
GWHAAZE00000001mRNA100664579100672681-
GWHAAZE00000001exon100672496100672681-
GWHAAZE00000001exon100672257100672352-
GWHAAZE00000001exon100672055100672175-
GWHAAZE00000001exon100671827100671933-
GWHAAZE00000001exon100671406100671623-
GWHAAZE00000001exon100670897100671074-
GWHAAZE00000001exon100670618100670737-
GWHAAZE00000001exon100670146100670232-
GWHAAZE00000001exon100669771100669881-
GWHAAZE00000001exon100664789100665439-
GWHAAZE00000001exon100664579100664695-
GWHAAZE00000001CDS100672496100672681-
GWHAAZE00000001CDS100672257100672352-
GWHAAZE00000001CDS100672055100672175-
GWHAAZE00000001CDS100671827100671933-
GWHAAZE00000001CDS100671406100671623-
GWHAAZE00000001CDS100670897100671074-
GWHAAZE00000001CDS100670618100670737-
GWHAAZE00000001CDS100670146100670232-
GWHAAZE00000001CDS100669771100669881-
GWHAAZE00000001CDS100664789100665439-
GWHAAZE00000001CDS100664579100664695-
Transcript Sequence

Network for GWHGAAZE003596

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0242


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00226.32DnaJ1001607.60E-19
PF02889.17Sec632226028.00E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09540SEC63, DNAJC23 Protein export map03060
Protein processing in endoplasmic reticulummap04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf53.302
SRR3591706second leaf28.979
SRR3591707mature leaf28.994
SRR3591708Shoot apex30.080
SRR3591709Stem48.700
SRR3591710White floral bud54.155
SRR3591711White flower55.999
SRR3591712Green floral bud55.850
SRR3591713Yellow flower53.811
SRP173429 SRR8316895Juvenile bud stage 24.712
SRR8316896Juvenile bud stage 33.403
SRR8316897Juvenile bud stage 15.763
SRR8316894Third green stage 16.211
SRR8316900Third green stage 51.332
SRR8316901Third green stage 50.138
SRR8316898Complete white stage 25.107
SRR8316899Complete white stage 66.437
SRR8316903Complete white stage 48.217
SRR8316902Silver flowering stage28.066
SRR8316904Silver flowering stage46.094
SRR8316905Silver flowering stage19.361
SRR8316906Gold flowering stage 63.570
SRR8316907Gold flowering stage 67.034
SRR8316908Gold flowering stage 69.298
SRP132670SRR6706286Control57.533
SRR6706287Light intensity 50%52.579
SRR6706288Light intensity 20%57.600
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.574
CNS0095593Slightly white alabastrum(diploid) 227.085
CNS0095594Slightly white alabastrum(diploid) 328.832
CNS0095595Whole white alabastrum(diploid) 230.035
CNS0095596Whole white alabastrum(diploid) 331.457
CNS0095597Whole white alabastrum(diploid) 431.574
CNS0095598Silvery flower (diploied) 134.164
CNS0095599Silvery flower (diploied) 226.714
CNS0095600Silvery flower (diploied) 354.895
CNS0095601Golden flower (diploid) 130.887
CNS0095602Golden flower (diploid) 257.504
CNS0095603Golden flower (diploid) 357.588
CNS0095604Slightly white alabastrum(tetraploid) 129.303
CNS0095605Slightly white alabastrum(tetraploid) 224.905
CNS0095606Slightly white alabastrum(tetraploid) 345.495
CNS0095607Whole white alabastrum(tetraploid) 125.598
CNS0095608Whole white alabastrum(tetraploid) 229.668
CNS0095609Whole white alabastrum(tetraploid) 340.844
CNS0095610Silvery flower (tetraploid) 156.987
CNS0095611Silvery flower (tetraploid) 245.924
CNS0095612Silvery flower (tetraploid) 334.208
CNS0095613Golden flower (tetraploid) 136.096
CNS0095614Golden flower (tetraploid) 252.445
CNS0095615Golden flower (tetraploid) 352.728
CRA001975CRR073297Stem 137.298
CRR073298Stem 231.933
CRR073299Stem 334.319
CRR073300Leaf 148.435
CRR073301Leaf 246.365
CRR073302Leaf 338.016
CRR073303Juvenile bud 148.384
CRR073304Juvenile bud 247.972
CRR073305Juvenile bud 357.531
CRR073306Third green 129.783
CRR073307Third green 226.801
CRR073308Third green 331.851
CRR073309Second white 129.112
CRR073310Second white 229.176
CRR073311Second white 328.505
CRR073312Silver flowering 132.702
CRR073313Silver flowering 239.315
CRR073314Silver flowering 330.554
CRR073315Gold flowering 115.314
CRR073316Gold flowering 230.746
CRR073317Gold flowering 320.692
CRR073318Tawny withering 142.414
CRR073319Tawny withering 234.399
CRR073320Tawny withering 334.753