Gene detail

Detail information of GWHGAAZE003602

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006362653.1	0	PREDICTED: protein SGT1 homolog [Solanum tuberosum]
COG	NP_602587.1	5E-10	hypothetical protein FN1787
Swissprot	tr\|Q0JL44\|SGT1_ORYSJ	5E-157	Protein SGT1 homolog
trEMBL	tr\|M1BVI5\|M1BVI5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400053839}
TAIR10	AT4G11260.1	2E-119	phosphatase-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100757626	100765485	+
GWHAAZE00000001	mRNA	100757626	100765485	+
GWHAAZE00000001	exon	100757626	100757803	+
GWHAAZE00000001	exon	100758452	100758521	+
GWHAAZE00000001	exon	100759823	100759947	+
GWHAAZE00000001	exon	100760851	100761016	+
GWHAAZE00000001	exon	100761923	100762019	+
GWHAAZE00000001	exon	100762146	100762211	+
GWHAAZE00000001	exon	100762730	100762868	+
GWHAAZE00000001	exon	100764901	100765004	+
GWHAAZE00000001	exon	100765105	100765209	+
GWHAAZE00000001	exon	100765378	100765485	+
GWHAAZE00000001	five_prime_UTR	100757626	100757643	+
GWHAAZE00000001	CDS	100757644	100757803	+
GWHAAZE00000001	CDS	100758452	100758521	+
GWHAAZE00000001	CDS	100759823	100759947	+
GWHAAZE00000001	CDS	100760851	100761016	+
GWHAAZE00000001	CDS	100761923	100762019	+
GWHAAZE00000001	CDS	100762146	100762211	+
GWHAAZE00000001	CDS	100762730	100762868	+
GWHAAZE00000001	CDS	100764901	100765004	+
GWHAAZE00000001	CDS	100765105	100765209	+
GWHAAZE00000001	CDS	100765378	100765485	+

Transcript Sequence
>GWHTAAZE003608 AGATTATTTACTCCTCCAATGGCGTCCGATCTGGAGACCAGGGCTAAAGAGGCCTTTATCGATGACCACTTCGAACTGGCTGTTGAGCTCTACTCTCAAGCCATTTCCATTAACCCTAACAACGCTGAGCTTTTCGCCGACCGTGCTCAGGCCAACGTCAAGCTCAATAGCTTCACTGAAGCCGTTGCTGATGCAAACAGAGCAATTGAGTTGGATCCTAAAATGTTTAAAGCGTATCTGCGAAAAGGCATGGCATGCATCAAGCTTGAAGAGTATCAAACAGCTAAGGCAGCTTTGGAGAAAGGTGCTTCATTAGCACCCGGAGATTCAAGATTCACTAACTTGATCAAAGAATGTGACGAGGGCATTGCAGAGGAAATCGGTGAGCTACAAAAACTGTCATTGGATAAAGCCTCAAGTAATGTTGTCATTCCTGATTCTCAATTACTGGATAAACCTGCTGTGACTCTAGAAGGAACTCAGCCAGTTAATAACTTGCCCGATCAGGTCACAGTATCAGCCCCCAAACCAAATTACAGGCACGGATTCTACCAGAAACCAGAGGAAGTGGTTGTGACTATATTTGCAAAGGGTGTACCAGCGAAAAGTGTTTCTGTTGATTTTGGAGAGCAAATACTAAGTGTTACCATTGATGTTCCTGGCCAAGATGCATATACTTTTCAACCTCGCTTGTTTGGAAAGATAGTTCCTGCAAAGTGCAAATATGAAGTGCTATCTACAAAGGTTGAAATTCGTCTTGCAAAAGCTGAAGCAATACACTGGGCGTGTCTCGAATTTAGCAAGGATAATATTGTTCCTCAAAAGATAAATATACCTTCAGAATCTCTCTCTCTGCATTCCACAGGGAATCAGAAACCAGCATATCCATCCTCAAAGCCGAAAACAGTTGATTGGGATAAACTGGAAGCTCAGGTGAAAAAGGAGGAAAAAGAAGAAAAATTGGATGGGGACGAAGCTTTGAACAAATTTTTCCAGGATATATACAAAGATGCTGACGAGGACACTAGAAGAGCCATGAGAAAATCCTTTATTGAGTCAAATGGAACGGTGCTGTCAACAAATTGGAAAGACGTGGGTTCGAAGAAGGTGGAAGGAAGCCCTCCGGATGGCATGGAGATGAAGAAATGGGAATACTAA

Network for GWHGAAZE003602

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13181.7	TPR_8	37	68	0.028
PF13181.7	TPR_8	71	102	0.00026
PF04969.17	CS	174	249	2.80E-13
PF05002.16	SGS	298	377	5.10E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12795	SUGT1, SGT1	NOD-like receptor signaling pathway	map04621
K12795	SUGT1, SGT1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	116.748
	SRR3591706	second leaf	96.219
	SRR3591707	mature leaf	123.094
	SRR3591708	Shoot apex	90.718
	SRR3591709	Stem	97.883
	SRR3591710	White floral bud	106.241
	SRR3591711	White flower	123.353
	SRR3591712	Green floral bud	105.163
	SRR3591713	Yellow flower	97.401
SRP173429	SRR8316895	Juvenile bud stage	66.089
	SRR8316896	Juvenile bud stage	87.310
	SRR8316897	Juvenile bud stage	39.354
	SRR8316894	Third green stage	29.124
	SRR8316900	Third green stage	85.852
	SRR8316901	Third green stage	81.231
	SRR8316898	Complete white stage	35.754
	SRR8316899	Complete white stage	148.453
	SRR8316903	Complete white stage	55.131
	SRR8316902	Silver flowering stage	35.163
	SRR8316904	Silver flowering stage	46.192
	SRR8316905	Silver flowering stage	23.389
	SRR8316906	Gold flowering stage	72.559
	SRR8316907	Gold flowering stage	66.776
	SRR8316908	Gold flowering stage	79.908
SRP132670	SRR6706286	Control	66.128
	SRR6706287	Light intensity 50%	66.478
	SRR6706288	Light intensity 20%	69.860
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.432
	CNS0095593	Slightly white alabastrum(diploid) 2	46.135
	CNS0095594	Slightly white alabastrum(diploid) 3	47.987
	CNS0095595	Whole white alabastrum(diploid) 2	43.360
	CNS0095596	Whole white alabastrum(diploid) 3	36.122
	CNS0095597	Whole white alabastrum(diploid) 4	37.572
	CNS0095598	Silvery flower (diploied) 1	61.596
	CNS0095599	Silvery flower (diploied) 2	54.338
	CNS0095600	Silvery flower (diploied) 3	66.500
	CNS0095601	Golden flower (diploid) 1	53.454
	CNS0095602	Golden flower (diploid) 2	67.602
	CNS0095603	Golden flower (diploid) 3	68.797
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.517
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.952
	CNS0095606	Slightly white alabastrum(tetraploid) 3	123.921
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.578
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.135
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.352
	CNS0095610	Silvery flower (tetraploid) 1	114.450
	CNS0095611	Silvery flower (tetraploid) 2	119.104
	CNS0095612	Silvery flower (tetraploid) 3	94.199
	CNS0095613	Golden flower (tetraploid) 1	68.776
	CNS0095614	Golden flower (tetraploid) 2	96.115
	CNS0095615	Golden flower (tetraploid) 3	75.807
CRA001975	CRR073297	Stem 1	75.484
	CRR073298	Stem 2	72.880
	CRR073299	Stem 3	72.682
	CRR073300	Leaf 1	72.013
	CRR073301	Leaf 2	63.998
	CRR073302	Leaf 3	69.675
	CRR073303	Juvenile bud 1	67.270
	CRR073304	Juvenile bud 2	62.460
	CRR073305	Juvenile bud 3	60.775
	CRR073306	Third green 1	21.616
	CRR073307	Third green 2	29.133
	CRR073308	Third green 3	27.774
	CRR073309	Second white 1	38.957
	CRR073310	Second white 2	38.448
	CRR073311	Second white 3	28.334
	CRR073312	Silver flowering 1	22.729
	CRR073313	Silver flowering 2	26.506
	CRR073314	Silver flowering 3	21.206
	CRR073315	Gold flowering 1	74.972
	CRR073316	Gold flowering 2	123.010
	CRR073317	Gold flowering 3	80.554
	CRR073318	Tawny withering 1	73.801
	CRR073319	Tawny withering 2	58.698
	CRR073320	Tawny withering 3	82.097