Gene detail

Detail information of GWHGAAZE003612

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275544.2	2.1374E-107	PREDICTED: F-box protein At5g52880 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9FLX3\|FB293_ARATH	2E-66	F-box protein At5g52880
trEMBL	tr\|E0CUQ7\|E0CUQ7_VITVI	8E-108	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22607.3}
TAIR10	AT5G52880.1	7E-55	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	100938140	100941940	-
GWHAAZE00000001	mRNA	100938140	100941940	-
GWHAAZE00000001	exon	100938140	100938268	-
GWHAAZE00000001	exon	100938363	100938511	-
GWHAAZE00000001	exon	100939107	100939286	-
GWHAAZE00000001	exon	100939548	100939688	-
GWHAAZE00000001	exon	100940869	100941023	-
GWHAAZE00000001	exon	100941575	100941940	-
GWHAAZE00000001	five_prime_UTR	100941760	100941940	-
GWHAAZE00000001	CDS	100941575	100941759	-
GWHAAZE00000001	CDS	100940869	100941023	-
GWHAAZE00000001	CDS	100939548	100939688	-
GWHAAZE00000001	CDS	100939107	100939286	-
GWHAAZE00000001	CDS	100938363	100938511	-
GWHAAZE00000001	CDS	100938140	100938268	-

Transcript Sequence
>GWHTAAZE003618 CGCCCTTGTGTGATGTTACCCGTATTTCTGTTGAGACTATAAACAGAGGCGGCATCACCGTTAAAAAGTCGTTTCCCTGTCCCCGTAGAGGTATCGCGTTTCTCTTTCCCCGATGATCAATCAGATCGATCGTTGTCTGATTTTGCCCTAATCTCACGTGTTAGGGTTTTAGGCCCTAATCATGGCAGGGCCACGAGATAGATACGAAAAACTAGGTTTAACAGAGTCCCTATCTCGAATCTACCGATATCCATTAGCTTGCAAAGAGCTCGCTTTCATTCTCAGACTTGCTTATTCCAAACTGCCTAAAAATCTCCAGTCTCTCATCTTCCAGGACACACTCACCGCTTTCCGCCTCCTTCCTGAAATGCAGACACAAACTGCTGTTTCAGCGGTTAATTTCCTCCTTCAGGGTGCTGAGGCTGCATTGCCAAAGCAGAAGAGGAGTCTCGCTGTAAAAGAATTCAAACATGCGATGGTTGCTCATAAGAGACGTTGCAAATCACAGAAGGAGGAAGAAGGCATAGCTCAACTTCCTCAAGACGTTCTCGTGCACATCTTCAGCTTCTTAGATTTGCAATCTTTAGTTTCTGCTGCAATAGTCTGCCAGTACTTTTTTCTTCCGTTACGCTTCCAGTTTTTTACATTTAAGCTGGGTCCAGGTGACAACAATCTCTGGCAGTCGCAGTATGTTATTTTCTTTGGCCATTCTGATAATTATTCTAAGATAAAGTTTCTTCAAAGTGAACTTGACGAGAATGAGAAGAATTCACATTTGCGAAAGGATGCTATTGCCATAGATGGTATTGACTGGAGATATGCTTTTAAGAGAGCATATGAAGGCGTTACATCGAAGAAATTTATTATGTCTTCTAGGGGCTGCTGCAGGTACTGCAATGCAATAGTCTGGCTCAGTGACTTGCAGTCTTCCAATGAATGCTTCAGACTAAATTGTAAAAATCACCAAATCAAACCCATATCAACTCAGCAGATTGTTGAGTACATAGTGGATGACTCTCGGTCATTGATATCTTCGTCAGATAGCGATAGCGACTCAGATGAAGGGTCTATCTCCAAGCTGTGGGCATATCCCAGGAGCATTAACAAGACTTCTTTTTGA

Network for GWHGAAZE003612

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	115	145	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.464
	SRR3591706	second leaf	4.720
	SRR3591707	mature leaf	12.546
	SRR3591708	Shoot apex	9.454
	SRR3591709	Stem	12.961
	SRR3591710	White floral bud	13.328
	SRR3591711	White flower	15.500
	SRR3591712	Green floral bud	12.358
	SRR3591713	Yellow flower	16.071
SRP173429	SRR8316895	Juvenile bud stage	5.209
	SRR8316896	Juvenile bud stage	9.577
	SRR8316897	Juvenile bud stage	4.213
	SRR8316894	Third green stage	3.750
	SRR8316900	Third green stage	8.880
	SRR8316901	Third green stage	8.482
	SRR8316898	Complete white stage	5.694
	SRR8316899	Complete white stage	18.423
	SRR8316903	Complete white stage	10.571
	SRR8316902	Silver flowering stage	4.846
	SRR8316904	Silver flowering stage	6.054
	SRR8316905	Silver flowering stage	3.016
	SRR8316906	Gold flowering stage	8.717
	SRR8316907	Gold flowering stage	8.094
	SRR8316908	Gold flowering stage	7.747
SRP132670	SRR6706286	Control	8.342
	SRR6706287	Light intensity 50%	10.210
	SRR6706288	Light intensity 20%	9.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.791
	CNS0095593	Slightly white alabastrum(diploid) 2	5.428
	CNS0095594	Slightly white alabastrum(diploid) 3	5.428
	CNS0095595	Whole white alabastrum(diploid) 2	6.348
	CNS0095596	Whole white alabastrum(diploid) 3	5.646
	CNS0095597	Whole white alabastrum(diploid) 4	4.617
	CNS0095598	Silvery flower (diploied) 1	8.327
	CNS0095599	Silvery flower (diploied) 2	9.863
	CNS0095600	Silvery flower (diploied) 3	9.016
	CNS0095601	Golden flower (diploid) 1	6.804
	CNS0095602	Golden flower (diploid) 2	11.489
	CNS0095603	Golden flower (diploid) 3	9.476
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.919
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.473
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.655
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.894
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.607
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.948
	CNS0095610	Silvery flower (tetraploid) 1	9.503
	CNS0095611	Silvery flower (tetraploid) 2	8.774
	CNS0095612	Silvery flower (tetraploid) 3	5.759
	CNS0095613	Golden flower (tetraploid) 1	6.817
	CNS0095614	Golden flower (tetraploid) 2	8.283
	CNS0095615	Golden flower (tetraploid) 3	10.554
CRA001975	CRR073297	Stem 1	4.319
	CRR073298	Stem 2	3.882
	CRR073299	Stem 3	4.485
	CRR073300	Leaf 1	7.276
	CRR073301	Leaf 2	5.515
	CRR073302	Leaf 3	4.450
	CRR073303	Juvenile bud 1	4.981
	CRR073304	Juvenile bud 2	5.011
	CRR073305	Juvenile bud 3	6.618
	CRR073306	Third green 1	2.358
	CRR073307	Third green 2	2.602
	CRR073308	Third green 3	3.375
	CRR073309	Second white 1	4.418
	CRR073310	Second white 2	3.679
	CRR073311	Second white 3	1.917
	CRR073312	Silver flowering 1	3.026
	CRR073313	Silver flowering 2	4.027
	CRR073314	Silver flowering 3	4.268
	CRR073315	Gold flowering 1	4.810
	CRR073316	Gold flowering 2	6.182
	CRR073317	Gold flowering 3	5.381
	CRR073318	Tawny withering 1	6.238
	CRR073319	Tawny withering 2	8.964
	CRR073320	Tawny withering 3	6.682