Gene detail

Detail information of GWHGAAZE003616

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010662632.1	0	PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Vitis vinifera]
COG	YP_003890046.1	0.00000008	XRE family transcriptional regulator
trEMBL	tr\|B9RIP8\|B9RIP8_RICCO	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF49020.1}
TAIR10	AT3G49660.1	2E-10	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101060285	101066532	+
GWHAAZE00000001	mRNA	101060285	101066532	+
GWHAAZE00000001	exon	101060285	101060702	+
GWHAAZE00000001	exon	101060777	101060937	+
GWHAAZE00000001	exon	101061125	101061246	+
GWHAAZE00000001	exon	101061316	101061605	+
GWHAAZE00000001	exon	101062266	101062318	+
GWHAAZE00000001	exon	101062499	101062593	+
GWHAAZE00000001	exon	101063114	101063216	+
GWHAAZE00000001	exon	101063389	101063483	+
GWHAAZE00000001	exon	101063573	101063635	+
GWHAAZE00000001	exon	101063825	101063900	+
GWHAAZE00000001	exon	101064036	101064139	+
GWHAAZE00000001	exon	101064551	101064609	+
GWHAAZE00000001	exon	101064724	101064778	+
GWHAAZE00000001	exon	101065831	101065918	+
GWHAAZE00000001	exon	101066395	101066532	+
GWHAAZE00000001	CDS	101060285	101060702	+
GWHAAZE00000001	CDS	101060777	101060937	+
GWHAAZE00000001	CDS	101061125	101061246	+
GWHAAZE00000001	CDS	101061316	101061605	+
GWHAAZE00000001	CDS	101062266	101062318	+
GWHAAZE00000001	CDS	101062499	101062593	+
GWHAAZE00000001	CDS	101063114	101063216	+
GWHAAZE00000001	CDS	101063389	101063483	+
GWHAAZE00000001	CDS	101063573	101063635	+
GWHAAZE00000001	CDS	101063825	101063900	+
GWHAAZE00000001	CDS	101064036	101064139	+
GWHAAZE00000001	CDS	101064551	101064609	+
GWHAAZE00000001	CDS	101064724	101064778	+
GWHAAZE00000001	CDS	101065831	101065918	+
GWHAAZE00000001	CDS	101066395	101066532	+

Transcript Sequence
>GWHTAAZE003622 ATGCTGCTGCTTGTAGGGCTCTCAAGACAAATGGAGAATATGCAGTATGCTGAGGAACTTGTGAGGGAGTTTCTTGTCTTCAGGGGTTTTACAAATACTCTGCAGGCTTTTGAGAAAGAGTTAGCCACTGATATAGGCAAAGGATTTCAAGTGAATAAGATATTAGACTTAATATTCTCAGTTTATGTTCCGAAATTTCAGCCTGAAAATTTAATTGGCCTGCTGAGCTTTTTCAAGCAGTGCCTTTTATCAACTGAAACAATCTTTGTTACTACTCTGTCAAAACTGGAGGTCTCTATTCTACGCTACTATATTATCCATGCCATACAATCAGGAAGGACAGATAAAGTCACAGAATTTTTTGGAATGAATGGCAACGACTTGCTGCAAAGAGACCAGGAATGGATTTCATGGTTTGCCATACCCTATCTAAAGAATCCGAGCTTGGATCCCCGGTTTCGCATATACTTTTCAAAAGAATGGTTTGATGCCCTGCATCTTTCCACCAGGAATTTTCTAAGTGAGATATTCAATGGAACTCATATCCTTCAGTTAGATTCTTATACGCATTGTTCTCCTATTAGTTCTGAAAGGAATACTGTGAAACATCTAAAGAAAGATATTAAGCATCTGAATCTCAAGCTGTCACAACTTCAGGCTCTGCTGGAGGAGAAAGAGGCTCAGTTATGTCGATCCAGGAGTAATCCTTCAACAGCCATGGAAGAAAGTATTGTTGGAACAGGCTACTCAACAGACTCTGTAACCAGGACTTTGCCGAGTTCTGTGCATGAGGAACAGAGTATTTCATCTATGGTTGCTAATGAAGCTTATATACCTGCGATTCCATATGGGGGTGAAACAGAGTCTTCTCAGGATGGGGATGTTACCCGACCTGCTGAGGCTCATGTTTCGAGTTCTAAACTGAAAAGTCATGTTGGTAAGAGTGGGAAAAGCAACGGCCTTGAAATATACCATGATGGATGTTCTATTGGGTCTGAAATGCAGAGAGAAGAAGAATTCCCAGAAGTGAAAGTAGAATTTCAGGAGACGTTTTTAGGCCATACAAGTCCAATCAGTCGATGTCGCTTTTCTGCTTCTGGGGATAATATTGCAAGTGCTTCTGTTGATGGCACAGTCAGGATATGGACATATGACTCGTCAACCCCTGCATCAAGAAATGCGACCATCTATTGTGGAGCAGAGATAATGTCGCTTGAGTGGGATTGTAAATCTGACCGCTTGCTTCTCATAGGCACTGCTGATGGAGGCATTAAAGCATGGAACGTTGATGCAAAGAGAGTTGTTTGCGATCTCAATACAACTGAAGGGTTCCCAAGTGTGCTGGACTTAAAATGCAGCCCCGTGGAACCAATCTTTGTTTCCGCAGCAGCATCCAAAGGGCATGGCACAAGTTATGTTGATAAACTGGGATTTGCATCACTAACTGTATGGAATATGAGAACATGGAAGCCTATGACAGTTCTTCCTCTTGGTAAAGATCCACCGGCAATTACTTCATTATGCTTCAACCACAATGGGAAGATTTTAGCTGCCGCAGCAACTGATGGGATGATCCACATATATTTGAATGGAGCTTGCAAAGTCAAGGTAAAGTTCTTTGGTCAAGAGACTGCGGCAGGCTCCAGAAAAGTGAGGATTATGGGGGTAGGTAATAGGTCATTGGCCGGTAATAGCTTCTGTAACCCTGAAAACGTGTTTAACTGTGGACATGAAATGGGTTTAGATTCTAATGGGAGGAGACTTTTGGTGACATCTCGTTCTGTTAGAGGGCATTTGAACGGGATGAGAACTCTTCCTCACAGTGCAGCTATAACTACGGTAGATTGGCACCCAACCTTGCCCATATTCCTCACTGGTTCGGTGGATAACTCAGTCCGGGTCACATCTCTGTCTTTGTAG

Network for GWHGAAZE003616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	349	382	1.40E-06
PF00400.33	WD40	501	528	0.035
PF00400.33	WD40	593	634	0.0053

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.586
	SRR3591706	second leaf	8.544
	SRR3591707	mature leaf	8.407
	SRR3591708	Shoot apex	10.085
	SRR3591709	Stem	14.951
	SRR3591710	White floral bud	12.201
	SRR3591711	White flower	16.108
	SRR3591712	Green floral bud	12.944
	SRR3591713	Yellow flower	13.115
SRP173429	SRR8316895	Juvenile bud stage	11.855
	SRR8316896	Juvenile bud stage	18.597
	SRR8316897	Juvenile bud stage	9.018
	SRR8316894	Third green stage	6.279
	SRR8316900	Third green stage	13.882
	SRR8316901	Third green stage	16.329
	SRR8316898	Complete white stage	5.052
	SRR8316899	Complete white stage	17.177
	SRR8316903	Complete white stage	8.680
	SRR8316902	Silver flowering stage	5.941
	SRR8316904	Silver flowering stage	9.012
	SRR8316905	Silver flowering stage	3.989
	SRR8316906	Gold flowering stage	12.004
	SRR8316907	Gold flowering stage	11.225
	SRR8316908	Gold flowering stage	11.043
SRP132670	SRR6706286	Control	8.508
	SRR6706287	Light intensity 50%	9.161
	SRR6706288	Light intensity 20%	9.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.491
	CNS0095593	Slightly white alabastrum(diploid) 2	12.522
	CNS0095594	Slightly white alabastrum(diploid) 3	13.009
	CNS0095595	Whole white alabastrum(diploid) 2	9.708
	CNS0095596	Whole white alabastrum(diploid) 3	10.947
	CNS0095597	Whole white alabastrum(diploid) 4	11.824
	CNS0095598	Silvery flower (diploied) 1	13.343
	CNS0095599	Silvery flower (diploied) 2	11.532
	CNS0095600	Silvery flower (diploied) 3	11.426
	CNS0095601	Golden flower (diploid) 1	10.613
	CNS0095602	Golden flower (diploid) 2	12.109
	CNS0095603	Golden flower (diploid) 3	10.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.974
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.894
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.081
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.661
	CNS0095610	Silvery flower (tetraploid) 1	14.217
	CNS0095611	Silvery flower (tetraploid) 2	12.495
	CNS0095612	Silvery flower (tetraploid) 3	13.863
	CNS0095613	Golden flower (tetraploid) 1	7.063
	CNS0095614	Golden flower (tetraploid) 2	12.246
	CNS0095615	Golden flower (tetraploid) 3	10.399
CRA001975	CRR073297	Stem 1	12.274
	CRR073298	Stem 2	11.442
	CRR073299	Stem 3	8.292
	CRR073300	Leaf 1	11.826
	CRR073301	Leaf 2	11.453
	CRR073302	Leaf 3	10.156
	CRR073303	Juvenile bud 1	9.998
	CRR073304	Juvenile bud 2	5.556
	CRR073305	Juvenile bud 3	9.959
	CRR073306	Third green 1	2.843
	CRR073307	Third green 2	3.031
	CRR073308	Third green 3	3.040
	CRR073309	Second white 1	4.615
	CRR073310	Second white 2	4.546
	CRR073311	Second white 3	4.431
	CRR073312	Silver flowering 1	4.287
	CRR073313	Silver flowering 2	3.913
	CRR073314	Silver flowering 3	5.367
	CRR073315	Gold flowering 1	3.940
	CRR073316	Gold flowering 2	9.464
	CRR073317	Gold flowering 3	4.023
	CRR073318	Tawny withering 1	10.423
	CRR073319	Tawny withering 2	11.215
	CRR073320	Tawny withering 3	8.865