Gene detail

Detail information of GWHGAAZE003635

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076022.1	0	PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial isoform X1 [Sesamum indicum]
COG	NP_422020.1	3E-176	cell division protein FtsH
Swissprot	tr\|Q9FGM0\|FTSHB_ARATH	0	ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|F6H6F7\|F6H6F7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47759.1}
TAIR10	AT5G53170.1	0	FTSH protease 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101344192	101353806	+
GWHAAZE00000001	mRNA	101344192	101353806	+
GWHAAZE00000001	exon	101344192	101344403	+
GWHAAZE00000001	exon	101345600	101345753	+
GWHAAZE00000001	exon	101345964	101346056	+
GWHAAZE00000001	exon	101346244	101346332	+
GWHAAZE00000001	exon	101346529	101346652	+
GWHAAZE00000001	exon	101347428	101347547	+
GWHAAZE00000001	exon	101347978	101348028	+
GWHAAZE00000001	exon	101348959	101349020	+
GWHAAZE00000001	exon	101349406	101349463	+
GWHAAZE00000001	exon	101350025	101350150	+
GWHAAZE00000001	exon	101350230	101350310	+
GWHAAZE00000001	exon	101351123	101351252	+
GWHAAZE00000001	exon	101351950	101352098	+
GWHAAZE00000001	exon	101352860	101353141	+
GWHAAZE00000001	exon	101353280	101353369	+
GWHAAZE00000001	exon	101353458	101353511	+
GWHAAZE00000001	exon	101353639	101353806	+
GWHAAZE00000001	CDS	101344192	101344403	+
GWHAAZE00000001	CDS	101345600	101345753	+
GWHAAZE00000001	CDS	101345964	101346056	+
GWHAAZE00000001	CDS	101346244	101346332	+
GWHAAZE00000001	CDS	101346529	101346652	+
GWHAAZE00000001	CDS	101347428	101347547	+
GWHAAZE00000001	CDS	101347978	101348028	+
GWHAAZE00000001	CDS	101348959	101349020	+
GWHAAZE00000001	CDS	101349406	101349463	+
GWHAAZE00000001	CDS	101350025	101350150	+
GWHAAZE00000001	CDS	101350230	101350310	+
GWHAAZE00000001	CDS	101351123	101351252	+
GWHAAZE00000001	CDS	101351950	101352098	+
GWHAAZE00000001	CDS	101352860	101353141	+
GWHAAZE00000001	CDS	101353280	101353369	+
GWHAAZE00000001	CDS	101353458	101353511	+
GWHAAZE00000001	CDS	101353639	101353806	+

Transcript Sequence
>GWHTAAZE003641 ATGGGATTGTTTGCCAGGGTTAGAAGAGTTTTTGAGAAAGTTTTGTTGTCCGATTGGTTTGATTTCCTGCCGTTTGGGCAGCAAGAGAAAAGATTGCAACTTTTGTATGCCGAAGCCGATGCGAATCCTAAGGATGTAGAAAAGCAAACTAATTTGTTGGTCGAGCTCAATAAGCATAGGTTAGGCTCTTCATTCTTACCACCTCCATCCATTCCCGAGTCTGTTATCAGCCGTTTTGAGCAGAGGGAGCATGCAGTAGACAGTAGAGGAGTAGCCGAGTACATTCGGGCTCTTGTGGCCACCAATGCTATTGCTGAATTTCTTCCAGATGAGCAATCAGGAAAGCCGTCCAGTCTTCCTGCTTTGTTGCAAGAATTGAAGCAACGTGCATCAGGGAATATGGATGAACCGTTTCTGAACCCTGGTACATCTGAGAAGCAGCCACTGCACGTAGTGATGGTTGACCCTAAATTGTCAAGAAGATCGTCACGTTTTACACAAGAGCTAATCTCGACCATCTTGTTCACAGTTGCTGTTGGTTTAATGTGGTTTATGGGTGCTGCTGCGCTTCAGAGGTATATTGCTAGTTTAGGTGGAATAGGAACTCCTGGTGTTGGATCAAGTTCTTCTTATTCCCCAAAGGAATTGAATAAAGAAATAATGCCTGAGAAGAATGTCAAAACATTTAAGGATGTCAAAGGTTGTGATGATGCTAAACAAGAGCTTGAGGAGGTGGTGGAGTACCTCAAAAACCCAACTAAGTTTACTCGACTTGGGGGGAAGTTGCCAAAGGGAATTCTATTGACTGGAGCACCAGGAACAGGGAAAACTCTTCTTGCCAAGGCTATTGCTGGAGAAGCTGGGGTACCTTTCTTTTACAGAGCAGGCTCTGAGTTTGAGGAGATGTTTGTTGGTGTTGGTGCTCGGCGCGTAAGATCCTTATTCCAAGCGGCAAAGAAGAAGGCTCCGTGCATCATTTTCATTGATGAAATTGATGCCGTTGGATCAACTAGGAAGCAATGGGAAGGTCATACAAAAAAAACTTTACATCAGCTACTTGTCGAAATGGATGGTTTTGAACAGAATGAGGGCATAATTTTGATGGCTGCCACAAACTTGCCAGATATTCTTGATCCTGCTTTAACAAGGCCTGGTAGATTTGACAGGCATATTGTTGTTCCGAATCCTGATGTGAGGGGTCGTCAAGAGATTTTGGAGCTGTATTTAAAAGACAAACCCCAGGCTGATGATGTTGATGTCAAAGCAATTGCTCGTGGCACACCAGGGTTCAACGGAGCAGATTTGGCGAACTTAGTGAACATTGCAGCCATTAAGGCTGCTGTTGAAGGTGCTGAGAAAGTAACTGCAACACAGTTGGAGTTTGCAAAAGACAGGATAATGATGGGTACAGAGAGGAAAACAATGTTCATATCCGAAGACTCAAAGAAGCTCACTGCATACCATGAAAGCGGCCATGCAATAGTTGCCTTAAATACCGATGGTGCACATCCCATTCACAAGGCAACAATAATGCCACGCGGATCCGCTTTGGGAATGGTTACACAACTCCCTTCAAGTGATGAGACATCAATAAGCAAGAAGCAGTTATTAGCACGACTTGATGTTTGCATGGGAGGAAGAGTTGCAGAAGAGCTCATCTTTGGTCAGGACTATGTCACTACGGGTGCTAGTAGTGATCTTAACACAGCTACAGAGCTTGCCCAGTATATGGTATCATCTTGTGGGATGAGTGATACAATTGGGCCAGTTCATATTAAAGAGCGGCCTGGTTCAGAAATGCAGTCACGCATTGATGCTGAAGTGGTCAAACTCTTAAGAGAAGCTTATGATCGCGTGAAAACCCTGCTAAAGAAGCATGAAAAGGCATTGCACACACTGGCCAATGCACTTCTAGAGTACGAGACACTGACTGCAGAAGAAATAAAGCGCCTTCTTCTTCCAAAGAGGGAAGGCCCACTGTCTGATCAAGAACAGCAACCACTACTACAGCAAGAGGAAGAAGAGGAACTTGTATTGGCATAA

Network for GWHGAAZE003635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	266	394	2.20E-40
PF17862.2	AAA_lid_3	417	459	5.70E-09
PF01434.19	Peptidase_M41	476	651	7.70E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08955	YME1	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0004222	molecular_function	metalloendopeptidase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.811
	SRR3591706	second leaf	46.739
	SRR3591707	mature leaf	68.476
	SRR3591708	Shoot apex	34.394
	SRR3591709	Stem	33.256
	SRR3591710	White floral bud	24.862
	SRR3591711	White flower	32.150
	SRR3591712	Green floral bud	13.369
	SRR3591713	Yellow flower	31.826
SRP173429	SRR8316895	Juvenile bud stage	18.110
	SRR8316896	Juvenile bud stage	24.040
	SRR8316897	Juvenile bud stage	11.043
	SRR8316894	Third green stage	9.198
	SRR8316900	Third green stage	19.238
	SRR8316901	Third green stage	21.419
	SRR8316898	Complete white stage	13.432
	SRR8316899	Complete white stage	24.864
	SRR8316903	Complete white stage	22.351
	SRR8316902	Silver flowering stage	16.640
	SRR8316904	Silver flowering stage	24.745
	SRR8316905	Silver flowering stage	12.061
	SRR8316906	Gold flowering stage	44.753
	SRR8316907	Gold flowering stage	36.991
	SRR8316908	Gold flowering stage	40.100
SRP132670	SRR6706286	Control	17.837
	SRR6706287	Light intensity 50%	18.195
	SRR6706288	Light intensity 20%	19.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.229
	CNS0095593	Slightly white alabastrum(diploid) 2	11.237
	CNS0095594	Slightly white alabastrum(diploid) 3	12.111
	CNS0095595	Whole white alabastrum(diploid) 2	10.185
	CNS0095596	Whole white alabastrum(diploid) 3	8.586
	CNS0095597	Whole white alabastrum(diploid) 4	12.178
	CNS0095598	Silvery flower (diploied) 1	30.817
	CNS0095599	Silvery flower (diploied) 2	24.572
	CNS0095600	Silvery flower (diploied) 3	36.184
	CNS0095601	Golden flower (diploid) 1	29.407
	CNS0095602	Golden flower (diploid) 2	38.871
	CNS0095603	Golden flower (diploid) 3	37.045
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.671
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.682
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.451
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.184
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.463
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.764
	CNS0095610	Silvery flower (tetraploid) 1	43.234
	CNS0095611	Silvery flower (tetraploid) 2	47.794
	CNS0095612	Silvery flower (tetraploid) 3	34.978
	CNS0095613	Golden flower (tetraploid) 1	25.774
	CNS0095614	Golden flower (tetraploid) 2	40.000
	CNS0095615	Golden flower (tetraploid) 3	43.088
CRA001975	CRR073297	Stem 1	31.577
	CRR073298	Stem 2	27.472
	CRR073299	Stem 3	25.674
	CRR073300	Leaf 1	26.797
	CRR073301	Leaf 2	25.620
	CRR073302	Leaf 3	15.488
	CRR073303	Juvenile bud 1	19.842
	CRR073304	Juvenile bud 2	15.025
	CRR073305	Juvenile bud 3	30.597
	CRR073306	Third green 1	11.415
	CRR073307	Third green 2	10.558
	CRR073308	Third green 3	12.382
	CRR073309	Second white 1	14.051
	CRR073310	Second white 2	16.864
	CRR073311	Second white 3	19.061
	CRR073312	Silver flowering 1	14.130
	CRR073313	Silver flowering 2	13.539
	CRR073314	Silver flowering 3	16.421
	CRR073315	Gold flowering 1	74.044
	CRR073316	Gold flowering 2	107.011
	CRR073317	Gold flowering 3	75.081
	CRR073318	Tawny withering 1	25.208
	CRR073319	Tawny withering 2	20.279
	CRR073320	Tawny withering 3	17.636