Detail information of GWHGAAZE003641


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011076008.10PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Sesamum indicum]
COGYP_003368755.10glutamate synthase (NADH)
Swissprottr|Q9LV03|GLUT1_ARATH0Glutamate synthase 1 [NADH], chloroplastic (Precursor)
trEMBLtr|A0A068U993|A0A068U993_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313|EMBL:CDP05076.1}
TAIR10AT5G53460.30NADH-dependent glutamate synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene101469065101475756-
GWHAAZE00000001mRNA101469065101475756-
GWHAAZE00000001exon101469065101469508-
GWHAAZE00000001exon101469610101469771-
GWHAAZE00000001exon101470049101470161-
GWHAAZE00000001exon101470282101471151-
GWHAAZE00000001exon101471254101471723-
GWHAAZE00000001exon101471819101471889-
GWHAAZE00000001exon101472012101472355-
GWHAAZE00000001exon101472443101472622-
GWHAAZE00000001exon101472900101473003-
GWHAAZE00000001exon101473142101473251-
GWHAAZE00000001exon101473628101473724-
GWHAAZE00000001exon101473815101473915-
GWHAAZE00000001exon101474558101474710-
GWHAAZE00000001exon101474857101474995-
GWHAAZE00000001exon101475151101475269-
GWHAAZE00000001exon101475598101475756-
GWHAAZE00000001CDS101475598101475756-
GWHAAZE00000001CDS101475151101475269-
GWHAAZE00000001CDS101474857101474995-
GWHAAZE00000001CDS101474558101474710-
GWHAAZE00000001CDS101473815101473915-
GWHAAZE00000001CDS101473628101473724-
GWHAAZE00000001CDS101473142101473251-
GWHAAZE00000001CDS101472900101473003-
GWHAAZE00000001CDS101472443101472622-
GWHAAZE00000001CDS101472012101472355-
GWHAAZE00000001CDS101471819101471889-
GWHAAZE00000001CDS101471254101471723-
GWHAAZE00000001CDS101470282101471151-
GWHAAZE00000001CDS101470049101470161-
GWHAAZE00000001CDS101469610101469771-
GWHAAZE00000001CDS101469065101469508-
Transcript Sequence

Network for GWHGAAZE003641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00310.22GATase_2504723.20E-173
PF04898.15Glu_syn_central5228101.90E-112
PF01645.18Glu_synthase87712051.20E-133
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00264GLT1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0006537biological_processglutamate biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0006807biological_processnitrogen compound metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0015930molecular_functionglutamate synthase activity
GO:0016638molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.295
SRR3591706second leaf33.332
SRR3591707mature leaf40.929
SRR3591708Shoot apex30.976
SRR3591709Stem110.787
SRR3591710White floral bud37.055
SRR3591711White flower46.949
SRR3591712Green floral bud21.321
SRR3591713Yellow flower30.134
SRP173429 SRR8316895Juvenile bud stage 30.857
SRR8316896Juvenile bud stage 36.874
SRR8316897Juvenile bud stage 12.275
SRR8316894Third green stage 16.030
SRR8316900Third green stage 28.426
SRR8316901Third green stage 29.539
SRR8316898Complete white stage 1.838
SRR8316899Complete white stage 16.316
SRR8316903Complete white stage 8.951
SRR8316902Silver flowering stage3.311
SRR8316904Silver flowering stage5.279
SRR8316905Silver flowering stage2.060
SRR8316906Gold flowering stage 9.172
SRR8316907Gold flowering stage 7.132
SRR8316908Gold flowering stage 12.391
SRP132670SRR6706286Control42.139
SRR6706287Light intensity 50%49.759
SRR6706288Light intensity 20%57.520
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.306
CNS0095593Slightly white alabastrum(diploid) 26.421
CNS0095594Slightly white alabastrum(diploid) 39.729
CNS0095595Whole white alabastrum(diploid) 28.508
CNS0095596Whole white alabastrum(diploid) 33.780
CNS0095597Whole white alabastrum(diploid) 49.726
CNS0095598Silvery flower (diploied) 125.092
CNS0095599Silvery flower (diploied) 234.300
CNS0095600Silvery flower (diploied) 318.592
CNS0095601Golden flower (diploid) 117.101
CNS0095602Golden flower (diploid) 230.229
CNS0095603Golden flower (diploid) 327.222
CNS0095604Slightly white alabastrum(tetraploid) 17.994
CNS0095605Slightly white alabastrum(tetraploid) 25.853
CNS0095606Slightly white alabastrum(tetraploid) 346.181
CNS0095607Whole white alabastrum(tetraploid) 18.586
CNS0095608Whole white alabastrum(tetraploid) 22.744
CNS0095609Whole white alabastrum(tetraploid) 329.090
CNS0095610Silvery flower (tetraploid) 19.845
CNS0095611Silvery flower (tetraploid) 28.999
CNS0095612Silvery flower (tetraploid) 37.233
CNS0095613Golden flower (tetraploid) 14.789
CNS0095614Golden flower (tetraploid) 29.649
CNS0095615Golden flower (tetraploid) 35.359
CRA001975CRR073297Stem 136.992
CRR073298Stem 227.062
CRR073299Stem 320.222
CRR073300Leaf 124.585
CRR073301Leaf 216.016
CRR073302Leaf 312.478
CRR073303Juvenile bud 18.324
CRR073304Juvenile bud 25.645
CRR073305Juvenile bud 313.661
CRR073306Third green 11.902
CRR073307Third green 20.785
CRR073308Third green 32.185
CRR073309Second white 10.743
CRR073310Second white 22.027
CRR073311Second white 31.462
CRR073312Silver flowering 15.335
CRR073313Silver flowering 26.093
CRR073314Silver flowering 34.520
CRR073315Gold flowering 11.248
CRR073316Gold flowering 22.954
CRR073317Gold flowering 31.215
CRR073318Tawny withering 19.438
CRR073319Tawny withering 29.951
CRR073320Tawny withering 39.873