Gene detail

Detail information of GWHGAAZE003643

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011076004.1	PREDICTED: splicing factor 3A subunit 3 [Sesamum indicum]
trEMBL	tr\|A0A059DFG3\|A0A059DFG3_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW89156.1}
TAIR10	AT5G06160.1	splicing factor-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101509402	101516162	+
GWHAAZE00000001	mRNA	101509402	101516162	+
GWHAAZE00000001	exon	101509402	101509575	+
GWHAAZE00000001	exon	101509702	101509818	+
GWHAAZE00000001	exon	101509942	101510046	+
GWHAAZE00000001	exon	101510878	101511020	+
GWHAAZE00000001	exon	101511586	101511682	+
GWHAAZE00000001	exon	101512227	101512391	+
GWHAAZE00000001	exon	101512727	101512798	+
GWHAAZE00000001	exon	101513681	101513839	+
GWHAAZE00000001	exon	101514045	101514122	+
GWHAAZE00000001	exon	101514989	101515117	+
GWHAAZE00000001	exon	101515476	101515622	+
GWHAAZE00000001	exon	101515914	101516050	+
GWHAAZE00000001	exon	101516135	101516162	+
GWHAAZE00000001	CDS	101509402	101509575	+
GWHAAZE00000001	CDS	101509702	101509818	+
GWHAAZE00000001	CDS	101509942	101510046	+
GWHAAZE00000001	CDS	101510878	101511020	+
GWHAAZE00000001	CDS	101511586	101511682	+
GWHAAZE00000001	CDS	101512227	101512391	+
GWHAAZE00000001	CDS	101512727	101512798	+
GWHAAZE00000001	CDS	101513681	101513839	+
GWHAAZE00000001	CDS	101514045	101514122	+
GWHAAZE00000001	CDS	101514989	101515117	+
GWHAAZE00000001	CDS	101515476	101515622	+
GWHAAZE00000001	CDS	101515914	101516050	+
GWHAAZE00000001	CDS	101516135	101516162	+

Transcript Sequence
>GWHTAAZE003649 ATGTCGTCGACACTACTGGAGCTGACTCGGTCGGCTCACGAGGAAGTGGAGCGGCTAGAGAGACTCATCGTCAAGGATCTACAAAACGATCCTACCTCCAACAAGGACCGACTCTTTCAGAGCCACCGTGTTCGTAACATGATCGATCAAATCTCCTCCACTACTCACAAACTGGTTGAGATTTATGAAGATAATGATAGTGCTAGGAAGGATGAGATTGCTGCTCTCGGGGGCCAAACCGCCACTGGTACTACTAACGTATTTAGTGCATTCTATGACAGATTAAAAGAGATTCGTGAGTATCATAGACGTCATCCTGCTGCACGTGTAGTTGATACCACTGACGAGTATGAGCAACTACTCAAGGAGGAACCACCAATTGAGTTCAGTGGGGAGGAAGCCTTCGGAAGATACCTAGATTTGCATGAATTGTTCAACAAGTACATCAATTCAAAATTTGGGGAGCCTATCGATTACTCTGCTTACCTCGAAGTTTTTTCACAACCACAGAAGATTCCTCGCAAATTGAAGCTAACAAGGCAGTATATGGAGTATTTGGGTAAATTATTGGAGTATCTAATCTACTTTTTTGAGAGGACAGAGCCTTTGCAAGATCTTGATAGAATATTCTCGAAGGTAGTAACTGAATTTGAAGAGGACTGGGCTAGTGGCATGGTACAAGGATGGGGGGACGAGGCTCAAGATAATGGACACATTCCATCTCAGAATACTGGAATTGATCTTGATTATTATAGTAATGTTGAAGAGCTAATCGAAGTGGGACCAGAGAAGTTAAAAGAGGCATTGGCTGCATTAGGACTAAAGACGGGGGGCACTGTTCAGCAGCGTGCAGAGAGGCTTTTTCTTACAAAGAATACACCTCTTGACAAGTTGGACAAAAAGCATTTTGCCAAAGGCTCACGCGGATCGCAACAGAATGGTGGTGTTGCAGCTCCACAACAAACTGACAATTCGAAAGAGGTTGCGCTGATGGAAGCGAAGTTGGAAAAGCTATGTGACCTGTTGCAGGAGACAATCGTGCGAACAAAAGAAAATGTTGAGAAGAAACAGGCTCTGACATATGAAGAAATGGAAGCAGAACGTGAGGAGGAAGAGGAACAAGCTGACAGTGAGAGTGATGATGAAGAGCAGCAGATCTATAATCCTTTAAAGCTTCCAATGGGATGGGATGGGAAACCTATTCCTTACTGGTTATATAAGCTTCATGGTCTTGGTCAGGAATTCAAATGCGAGATATGTGGGAACCACAGCTACTGGGGTCGAAGAGCTTATGAAAGGCATTTCAAGGAATGGCGACATCAGCATGGAATGCGCTGCCTGGGTATTCCGAACACCAAGAACTTCAATGAAATCACATCAATTGAGGAAGCAAAACAATTATGGGAGAGAATTCAAGAACGACAAGGAGTGAACAAGTGGCGCCCTGATCTTGAAGAAGAATATGAAGATCGTGAGGGTAACATTTACAATAAGAAGACATATACTGATCTGCAACGCCAGGGGTATCTTGCTGGGATTGGTTGCATCTAA

Network for GWHGAAZE003643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12108.9	SF3a60_bindingd	82	106	2.00E-12
PF16837.6	SF3A3	128	207	3.60E-24
PF13297.7	Telomere_Sde2_2	246	305	1.50E-26
PF11931.9	DUF3449	331	508	1.60E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12827	SF3A3, SAP61, PRP9	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.604
	SRR3591706	second leaf	30.643
	SRR3591707	mature leaf	27.440
	SRR3591708	Shoot apex	57.477
	SRR3591709	Stem	40.328
	SRR3591710	White floral bud	36.693
	SRR3591711	White flower	46.248
	SRR3591712	Green floral bud	43.326
	SRR3591713	Yellow flower	34.349
SRP173429	SRR8316895	Juvenile bud stage	32.246
	SRR8316896	Juvenile bud stage	42.282
	SRR8316897	Juvenile bud stage	23.077
	SRR8316894	Third green stage	16.999
	SRR8316900	Third green stage	39.928
	SRR8316901	Third green stage	39.048
	SRR8316898	Complete white stage	11.323
	SRR8316899	Complete white stage	50.397
	SRR8316903	Complete white stage	24.485
	SRR8316902	Silver flowering stage	14.745
	SRR8316904	Silver flowering stage	19.984
	SRR8316905	Silver flowering stage	10.072
	SRR8316906	Gold flowering stage	34.100
	SRR8316907	Gold flowering stage	32.813
	SRR8316908	Gold flowering stage	38.783
SRP132670	SRR6706286	Control	49.850
	SRR6706287	Light intensity 50%	48.482
	SRR6706288	Light intensity 20%	47.639
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.753
	CNS0095593	Slightly white alabastrum(diploid) 2	24.321
	CNS0095594	Slightly white alabastrum(diploid) 3	23.729
	CNS0095595	Whole white alabastrum(diploid) 2	21.204
	CNS0095596	Whole white alabastrum(diploid) 3	19.704
	CNS0095597	Whole white alabastrum(diploid) 4	18.513
	CNS0095598	Silvery flower (diploied) 1	34.171
	CNS0095599	Silvery flower (diploied) 2	28.140
	CNS0095600	Silvery flower (diploied) 3	34.256
	CNS0095601	Golden flower (diploid) 1	21.877
	CNS0095602	Golden flower (diploid) 2	32.278
	CNS0095603	Golden flower (diploid) 3	33.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.328
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.547
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.795
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.209
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.027
	CNS0095610	Silvery flower (tetraploid) 1	39.508
	CNS0095611	Silvery flower (tetraploid) 2	33.358
	CNS0095612	Silvery flower (tetraploid) 3	23.111
	CNS0095613	Golden flower (tetraploid) 1	19.601
	CNS0095614	Golden flower (tetraploid) 2	34.012
	CNS0095615	Golden flower (tetraploid) 3	24.123
CRA001975	CRR073297	Stem 1	47.176
	CRR073298	Stem 2	43.439
	CRR073299	Stem 3	36.126
	CRR073300	Leaf 1	31.551
	CRR073301	Leaf 2	33.247
	CRR073302	Leaf 3	25.307
	CRR073303	Juvenile bud 1	25.017
	CRR073304	Juvenile bud 2	17.539
	CRR073305	Juvenile bud 3	29.005
	CRR073306	Third green 1	7.591
	CRR073307	Third green 2	5.716
	CRR073308	Third green 3	8.453
	CRR073309	Second white 1	9.092
	CRR073310	Second white 2	13.037
	CRR073311	Second white 3	11.078
	CRR073312	Silver flowering 1	10.585
	CRR073313	Silver flowering 2	6.921
	CRR073314	Silver flowering 3	12.056
	CRR073315	Gold flowering 1	9.852
	CRR073316	Gold flowering 2	16.235
	CRR073317	Gold flowering 3	8.358
	CRR073318	Tawny withering 1	33.025
	CRR073319	Tawny withering 2	26.892
	CRR073320	Tawny withering 3	31.459