Gene detail

Detail information of GWHGAAZE003652

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009614623.1	0	PREDICTED: signal recognition particle receptor subunit alpha-like [Nicotiana tomentosiformis]
COG	NP_579495.1	2E-44	signal recognition particle receptor
Swissprot	tr\|P37106\|SR541_ARATH	1E-18	Signal recognition particle 54 kDa protein 1
trEMBL	tr\|M1ADI7\|M1ADI7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400020462}
TAIR10	AT4G30600.1	9E-122	signal recognition particle receptor alpha subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101657677	101661049	+
GWHAAZE00000001	mRNA	101657677	101661049	+
GWHAAZE00000001	exon	101657677	101657946	+
GWHAAZE00000001	exon	101658021	101658141	+
GWHAAZE00000001	exon	101658327	101658600	+
GWHAAZE00000001	exon	101658867	101658929	+
GWHAAZE00000001	exon	101659212	101659332	+
GWHAAZE00000001	exon	101659522	101659617	+
GWHAAZE00000001	exon	101659733	101659882	+
GWHAAZE00000001	exon	101659977	101660084	+
GWHAAZE00000001	exon	101660212	101660328	+
GWHAAZE00000001	exon	101660727	101660810	+
GWHAAZE00000001	exon	101660924	101661049	+
GWHAAZE00000001	CDS	101657677	101657946	+
GWHAAZE00000001	CDS	101658021	101658141	+
GWHAAZE00000001	CDS	101658327	101658600	+
GWHAAZE00000001	CDS	101658867	101658929	+
GWHAAZE00000001	CDS	101659212	101659332	+
GWHAAZE00000001	CDS	101659522	101659617	+
GWHAAZE00000001	CDS	101659733	101659882	+
GWHAAZE00000001	CDS	101659977	101660084	+
GWHAAZE00000001	CDS	101660212	101660328	+
GWHAAZE00000001	CDS	101660727	101660810	+
GWHAAZE00000001	CDS	101660924	101661049	+

Transcript Sequence
>GWHTAAZE003658 ATGTTAGAGCAGTTACTGATTTTCACTAGAGGAGGGTTGATCCTCTGGACATGTAAAGAGCTCGGAAATGCTATTAGAGGATCGCCCATCGACACCTTGATCAGGTCCTGCCTTCTGGAGGAAAGATCTGGTGCTGCTTCATACAATTATGAGGCACCTGGTGCTGCATACACGCTCAAGTGGACATTCCACAATGAACTTGGCCTTGTCTTTGTTGCCATTTATCAACGAATTCTCCATCTTTTATATGTGGACGATCTGCTTGCTATGCTTAGAACGGAGGCTGAAGCTCGTGCAGAGGAAATGAAGAAATCAAAGCAGGTCAGTAAGCCTGTGAATTACAATTTGGGTAAAAAGCAAGGGCATGTGCAAAAGTTGGGTGCTGAAGGAGCTACAAAGCTTAGAGCTAAAGGTGCTAAGAAACTGATACTGTTGTTAACAAGAGTTCAAGGAGGAACCAAAGAAAAGATAACAAAGAAGAACAGAGTTTGGGATGATTCACCTCGACAGTCAAAATTGGACTTTACAGATCCAGTGAGTGAGAATGGGGAAGAGAATATGGTGGTGGTTGCAGCGGATCAAGGTGAGAGTATGATGGACAGAGAGGAGCCGTCAGCAGTGAAAGTGAAAGTGAAGAAGATGAGGAAGCAGAGAAGGATAGAAAGGTCAGATCCCGTGACATTGGGTGCAATGTTCGAAGTTATGAATGTTGTAGAAACTAGAAAGCTATGCTTACATATCACTTTCCTTATGTTTTCTGCTCAGTATTGCGGAAAGGCAAATTTGGAGAAGGCAGATCTAGAACCAGCTTTGAAAGCTCTCAAGGATAGGCTCATGACAAAGAATGTGGCTGAAGAAATTGCTGAAAAACTTTGTGAATCAGTTGCAGCAAGTCTTGAGGGTAAAAAACTTGGCTCATTCACAAGGATATCATCAACAGTGCAGGCAGCAATGGAAGATGCTCTTATGCGCATCTTAACTCCCAGCAGCTCCATTGACATTATGAGATGTTCATGCCGCCAAGGAACAAAGCAAGCCATATGTTGTGGTTTTGTTGGAGTTAATGGTGTTGGAAAATCCACCAATCTTGCCAAGGTAGCTTACTGGCTTCAACAGCACAATGTCAATGTAATGATGGCTGCATGTGATACATTCCGTTCAGGAGCTGTTGAGCAGCTGCGTACTCATGCACGTAGACTCCAGATTCCTATATTTGAGAAGGGTTATGAGAAAGATCCTGCTATAGTAGCAAAGGAGGCAATACAAGAGGCGTCTCACTTGTTGGATGTGGTTCTTGTTGATACAGCAGGTCGTATGCAGAAACTAGCTGACTTATCACCCTCTCCTAGCCCTAGGTTGATCGATGGAATCCTGCTTACAAAGTTCGATACCATTGATGATAAGGTTGGAGCAGCACTGTCAATGGTATACATATCGGGAGCGCCTGTGATGTTTATTGGATGTGGTCAGTCGTACACGGACTTGAAGAAGCTCAATGTCAAGTCCATTGTCAAGACCCTCCTTAAATGA

Network for GWHGAAZE003652

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04086.14	SRP-alpha_N	28	94	4.50E-32
PF04086.14	SRP-alpha_N	154	203	1.10E-06
PF02881.20	SRP54_N	258	317	2.30E-05
PF00448.23	SRP54	351	442	2.30E-30
PF00448.23	SRP54	454	508	4.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13431	SRPR	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0006886	biological_process	intracellular protein transport
GO:0005785	cellular_component	signal recognition particle receptor complex
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity
GO:0005047	molecular_function	signal recognition particle binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.069
	SRR3591706	second leaf	1.479
	SRR3591707	mature leaf	1.390
	SRR3591708	Shoot apex	3.123
	SRR3591709	Stem	4.287
	SRR3591710	White floral bud	5.668
	SRR3591711	White flower	4.714
	SRR3591712	Green floral bud	3.294
	SRR3591713	Yellow flower	5.289
SRP173429	SRR8316895	Juvenile bud stage	5.488
	SRR8316896	Juvenile bud stage	8.579
	SRR8316897	Juvenile bud stage	6.811
	SRR8316894	Third green stage	3.562
	SRR8316900	Third green stage	9.961
	SRR8316901	Third green stage	12.719
	SRR8316898	Complete white stage	4.007
	SRR8316899	Complete white stage	13.121
	SRR8316903	Complete white stage	9.741
	SRR8316902	Silver flowering stage	7.013
	SRR8316904	Silver flowering stage	8.274
	SRR8316905	Silver flowering stage	4.022
	SRR8316906	Gold flowering stage	11.518
	SRR8316907	Gold flowering stage	10.271
	SRR8316908	Gold flowering stage	16.742
SRP132670	SRR6706286	Control	7.047
	SRR6706287	Light intensity 50%	8.270
	SRR6706288	Light intensity 20%	9.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.359
	CNS0095593	Slightly white alabastrum(diploid) 2	14.255
	CNS0095594	Slightly white alabastrum(diploid) 3	14.314
	CNS0095595	Whole white alabastrum(diploid) 2	13.366
	CNS0095596	Whole white alabastrum(diploid) 3	13.420
	CNS0095597	Whole white alabastrum(diploid) 4	17.623
	CNS0095598	Silvery flower (diploied) 1	10.715
	CNS0095599	Silvery flower (diploied) 2	12.716
	CNS0095600	Silvery flower (diploied) 3	14.546
	CNS0095601	Golden flower (diploid) 1	12.557
	CNS0095602	Golden flower (diploid) 2	15.963
	CNS0095603	Golden flower (diploid) 3	14.176
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.390
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.967
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.977
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.575
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.701
	CNS0095610	Silvery flower (tetraploid) 1	22.174
	CNS0095611	Silvery flower (tetraploid) 2	20.512
	CNS0095612	Silvery flower (tetraploid) 3	23.821
	CNS0095613	Golden flower (tetraploid) 1	27.471
	CNS0095614	Golden flower (tetraploid) 2	24.737
	CNS0095615	Golden flower (tetraploid) 3	32.409
CRA001975	CRR073297	Stem 1	15.082
	CRR073298	Stem 2	12.756
	CRR073299	Stem 3	12.566
	CRR073300	Leaf 1	18.879
	CRR073301	Leaf 2	16.424
	CRR073302	Leaf 3	15.257
	CRR073303	Juvenile bud 1	13.873
	CRR073304	Juvenile bud 2	16.244
	CRR073305	Juvenile bud 3	23.386
	CRR073306	Third green 1	16.062
	CRR073307	Third green 2	18.144
	CRR073308	Third green 3	17.637
	CRR073309	Second white 1	16.987
	CRR073310	Second white 2	17.907
	CRR073311	Second white 3	18.149
	CRR073312	Silver flowering 1	20.978
	CRR073313	Silver flowering 2	24.830
	CRR073314	Silver flowering 3	19.741
	CRR073315	Gold flowering 1	7.639
	CRR073316	Gold flowering 2	9.196
	CRR073317	Gold flowering 3	7.429
	CRR073318	Tawny withering 1	19.165
	CRR073319	Tawny withering 2	19.842
	CRR073320	Tawny withering 3	19.701