Gene detail

Detail information of GWHGAAZE003656

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011083961.1	0	PREDICTED: signal recognition particle receptor subunit alpha homolog [Sesamum indicum]
COG	NP_579495.1	1E-63	signal recognition particle receptor
Swissprot	tr\|P49972\|SR542_SOLLC	1E-31	Signal recognition particle 54 kDa protein 2
trEMBL	tr\|A0A022R6M2\|A0A022R6M2_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU35333.1}
TAIR10	AT4G30600.1	0	signal recognition particle receptor alpha subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101699217	101702622	+
GWHAAZE00000001	mRNA	101699217	101702622	+
GWHAAZE00000001	exon	101699217	101700202	+
GWHAAZE00000001	exon	101700423	101700485	+
GWHAAZE00000001	exon	101700805	101700889	+
GWHAAZE00000001	exon	101701081	101701176	+
GWHAAZE00000001	exon	101701292	101701444	+
GWHAAZE00000001	exon	101701541	101701648	+
GWHAAZE00000001	exon	101701776	101701895	+
GWHAAZE00000001	exon	101702071	101702196	+
GWHAAZE00000001	exon	101702304	101702387	+
GWHAAZE00000001	exon	101702500	101702622	+
GWHAAZE00000001	CDS	101699217	101700202	+
GWHAAZE00000001	CDS	101700423	101700485	+
GWHAAZE00000001	CDS	101700805	101700889	+
GWHAAZE00000001	CDS	101701081	101701176	+
GWHAAZE00000001	CDS	101701292	101701444	+
GWHAAZE00000001	CDS	101701541	101701648	+
GWHAAZE00000001	CDS	101701776	101701895	+
GWHAAZE00000001	CDS	101702071	101702196	+
GWHAAZE00000001	CDS	101702304	101702387	+
GWHAAZE00000001	CDS	101702500	101702622	+

Transcript Sequence
>GWHTAAZE003662 ATGTTAGAGCAGTTACTGATTTTCACTAGAGGAGGGTTGATCCTCTGGACATGTAAAGAGCTCGGAAATGCTATTAGAGGATCGCCCATCGACACCTTGATCAGGTCCTGCCTTCTGGAGGAAAGATCTGGTGCTGCTTCATACAATTATGAGGCACCTGGTGCTGCATACACGCTCAAGTGGACATTCCACAATGAACTTGGCCTTGTCTTTGTTGCCATTTATCAACGAATTCTCCATCTTTTATATGTGGACGATCTGCTTGCTATGGTGAAGCGGGAGTTCTCAGAGATTTATGATCCAAAACGGACAGTGTACAATGATTTTGATGACATATTTAGGCAGCTTAGAACGGAGGCTGAAGCTCGTGCAGAGGAAATGAAGAAATCAAAGCAGGTCAGTAAGCCTGTGAATTACAATTTGGGTAAAAAGCAAGGGCATGTGCAAAAGTTGGGTGCTGAAGGAGGTAGCAAAAAAAGTAGCAGCGGTGAATCTGGAAATGGCAGCGGTGGTGGTGGTGATGGTGACAAATTAAAAAATCGTAACTTTGAAAATGGACATTCCAATGGTAATCATGTTGGAAACAGGGAATTGCCCGCAAGGGGTAATGTAAATGGTAAAGAGAATGGAAGTGCCAATACCGGGGCTTTTGATGTAAATAAGCTACAAAAGCTTAGAGCTAAAGGTGCGAAGAAAACTGATACTGTTGTTAACAAGAGTTCCAAGGAGGAACCAAAGAAAAAGATAACAAAGAAGAACAGAGTTTGGGATGATTCACCTCGACAGTCAAAATTGGACTTTACAGATCCAGTGAGTGAGAATGGGGAAGAGAATATGGTGGTGGTTGCAGCGGATCAAGGTGAGAGTATGATGGACAGAGAGGAGACCGTCAGCAGTGAAAGTGAAAGTGAAGAAGATGAGGAAGCAGAGAAGGATAGAAAGGTAGATGCTAAGAAGAAAGGATGGTTTTCATCCATGTTCCAGAGGTCAGATCCCGTGACATTGGGTGCAATGTTCGAAGTTATGAATGTTGTAGAAACTAGAAAGCTTATTGCCGGAAAGGCAAATTTGGAGAAGGCAGATCTAGAACCAGCTTTGAAAGCTCTCAAGGATAGGCTCATGACAAAGAATGTGGCTGAAGAAATTGCTGAAAAACTTTGTGAATCAGTTGCAGCAAGTCTTGAGGGTAAAAAACTTGGCTCATTCACAAGGATATCATCAACAGTGCAGGCAGCAATGGAAGATGCTCTTGTACGCATCTTAACTCCCAGACGCTCCATTGACATTATGAGGGATGTTCATGCCGCCAAGGAACAAAGCAAGCCATATGTTGTGGTTTTTGTTGGAGTTAATGGTGTTGGAAAATCCACCAATCTTGCCAAGGTAGCTTACTGGCTTCAACAGCACAATGTCAATGTAATGATGGCTGCATGTGATACATTCCGTTCAGGAGCTGTTGAGCAGCTGCGTACTCATGCACGTAGACTCCAGATTCCTATATTTGAGAAGGGTTATGAGAAAGATCCTGCTATAGTAGCAAAGGAGGCAATACAAGAGGCGTCTCGAAACGGTTCGGATGTGGTTCTTGTTGATACAGCAGGTCGTATGCAGGATAATGAGCCACTAATGCGAGCTCTGTCGAAGCTCATCTATGTCAACAGCCCAGATCTGGTCCTCTTCGTTGGAGAGGCACTGGTTGGGAATGATGCTGTGGATCAACTATCAAAATTCAATCAGAAACTAGCTGACTTATCACCCTCTCCTAGCCCTAGGTTGATCGATGGAATCCTGCTTACAAAGTTCGATACCATTGATGATAAGGTTGGAGCAGCACTGTCAATGGTATACATATCGGAGCCTGTGATGTTTATTGGATGTGGTCAGTCGTACACGGACTTGAAGAAGCTCAATGTCAAGTCCATTGTCAAGACCCTCCTTAAATGA

Network for GWHGAAZE003656

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04086.14	SRP-alpha_N	28	306	9.20E-72
PF02881.20	SRP54_N	349	412	9.30E-06
PF00448.23	SRP54	443	646	1.20E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13431	SRPR	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0005785	cellular_component	signal recognition particle receptor complex
GO:0003924	molecular_function	GTPase activity
GO:0005047	molecular_function	signal recognition particle binding
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.782
	SRR3591706	second leaf	8.552
	SRR3591707	mature leaf	11.104
	SRR3591708	Shoot apex	15.196
	SRR3591709	Stem	33.868
	SRR3591710	White floral bud	27.986
	SRR3591711	White flower	29.891
	SRR3591712	Green floral bud	20.650
	SRR3591713	Yellow flower	28.753
SRP173429	SRR8316895	Juvenile bud stage	31.165
	SRR8316896	Juvenile bud stage	38.095
	SRR8316897	Juvenile bud stage	33.034
	SRR8316894	Third green stage	17.930
	SRR8316900	Third green stage	46.965
	SRR8316901	Third green stage	53.441
	SRR8316898	Complete white stage	23.889
	SRR8316899	Complete white stage	58.645
	SRR8316903	Complete white stage	52.308
	SRR8316902	Silver flowering stage	30.868
	SRR8316904	Silver flowering stage	45.513
	SRR8316905	Silver flowering stage	21.170
	SRR8316906	Gold flowering stage	68.435
	SRR8316907	Gold flowering stage	59.710
	SRR8316908	Gold flowering stage	104.201
SRP132670	SRR6706286	Control	49.410
	SRR6706287	Light intensity 50%	55.219
	SRR6706288	Light intensity 20%	54.397
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.161
	CNS0095593	Slightly white alabastrum(diploid) 2	33.813
	CNS0095594	Slightly white alabastrum(diploid) 3	32.776
	CNS0095595	Whole white alabastrum(diploid) 2	39.672
	CNS0095596	Whole white alabastrum(diploid) 3	37.105
	CNS0095597	Whole white alabastrum(diploid) 4	47.408
	CNS0095598	Silvery flower (diploied) 1	33.667
	CNS0095599	Silvery flower (diploied) 2	30.149
	CNS0095600	Silvery flower (diploied) 3	59.171
	CNS0095601	Golden flower (diploid) 1	31.921
	CNS0095602	Golden flower (diploid) 2	56.880
	CNS0095603	Golden flower (diploid) 3	56.407
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.524
	CNS0095605	Slightly white alabastrum(tetraploid) 2	62.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	94.655
	CNS0095607	Whole white alabastrum(tetraploid) 1	81.372
	CNS0095608	Whole white alabastrum(tetraploid) 2	87.209
	CNS0095609	Whole white alabastrum(tetraploid) 3	95.084
	CNS0095610	Silvery flower (tetraploid) 1	118.095
	CNS0095611	Silvery flower (tetraploid) 2	91.369
	CNS0095612	Silvery flower (tetraploid) 3	99.251
	CNS0095613	Golden flower (tetraploid) 1	97.603
	CNS0095614	Golden flower (tetraploid) 2	114.011
	CNS0095615	Golden flower (tetraploid) 3	135.149
CRA001975	CRR073297	Stem 1	53.648
	CRR073298	Stem 2	54.338
	CRR073299	Stem 3	48.245
	CRR073300	Leaf 1	69.329
	CRR073301	Leaf 2	61.328
	CRR073302	Leaf 3	52.622
	CRR073303	Juvenile bud 1	61.197
	CRR073304	Juvenile bud 2	63.579
	CRR073305	Juvenile bud 3	71.401
	CRR073306	Third green 1	57.251
	CRR073307	Third green 2	58.484
	CRR073308	Third green 3	56.628
	CRR073309	Second white 1	58.556
	CRR073310	Second white 2	60.163
	CRR073311	Second white 3	66.962
	CRR073312	Silver flowering 1	76.784
	CRR073313	Silver flowering 2	80.251
	CRR073314	Silver flowering 3	68.155
	CRR073315	Gold flowering 1	29.787
	CRR073316	Gold flowering 2	35.797
	CRR073317	Gold flowering 3	25.257
	CRR073318	Tawny withering 1	56.938
	CRR073319	Tawny withering 2	60.737
	CRR073320	Tawny withering 3	54.384