Gene detail

Detail information of GWHGAAZE003657

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006441084.1	1.4605E-123	hypothetical protein CICLE_v10022148mg [Citrus clementina]
Swissprot	tr\|Q3HRP0\|CNBL7_ORYSJ	5E-109	Calcineurin B-like protein 7
trEMBL	tr\|A0A067EGH3\|A0A067EGH3_CITSI	5E-124	Uncharacterized protein {ECO:0000313\|EMBL:KDO54254.1}
TAIR10	AT5G24270.2	6E-86	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101722787	101724346	-
GWHAAZE00000001	mRNA	101722787	101724346	-
GWHAAZE00000001	exon	101724225	101724346	-
GWHAAZE00000001	exon	101724060	101724142	-
GWHAAZE00000001	exon	101723833	101723892	-
GWHAAZE00000001	exon	101723557	101723665	-
GWHAAZE00000001	exon	101723325	101723401	-
GWHAAZE00000001	exon	101723153	101723233	-
GWHAAZE00000001	exon	101722922	101723034	-
GWHAAZE00000001	exon	101722787	101722841	-
GWHAAZE00000001	five_prime_UTR	101724304	101724346	-
GWHAAZE00000001	CDS	101724225	101724303	-
GWHAAZE00000001	CDS	101724060	101724142	-
GWHAAZE00000001	CDS	101723833	101723892	-
GWHAAZE00000001	CDS	101723557	101723665	-
GWHAAZE00000001	CDS	101723325	101723401	-
GWHAAZE00000001	CDS	101723153	101723233	-
GWHAAZE00000001	CDS	101722922	101723034	-
GWHAAZE00000001	CDS	101722787	101722841	-

Transcript Sequence
>GWHTAAZE003663 TTGCGTTTAGCATGAACCTAAACATTGCAAGTTACCAAATTTGATGGGTTGCATTTGCTCAACAAAAACCGGACATTCACCTGGATACGAGGAGCCTGCCGTTCTTGCTGCTGAAACCCCATTCACGGTGAATGAAGTAGAGGCCTTGTATGAGCTATTTAAAAAATTAAGTAACTCCATTTTTACTGATGGGCTTATTCACAAGGAAGAGTTTCAGCTTGCACTCTTCAGGAACCAAAACAGGAAGAATCTCTTTGCAGACAGGATATTTGACATGTTTGATCTCAAACGCAATGGAGTTATTGAGTTTGGAGAGTTTGTCCGATCATTAGGCGTTTTTCACCCAAATGCACCTGCAGCAGAAAAAATTGCGTTTGCGTTTAGATTGTATGATCTGAGGCAAACTGGCTTTATTGAGAGAGAAGAGGCAAGTAGTATGGCTTGCCTATTTTTGCAAATGATGGTATCAGCACTGTTGCACGAATCTGATCTCGTGCTCTCCGATGATGTTGTTGAAATGATTGTGGATAGGACATTCAGTGATGCGGATACAAAAGGTGATGGAAGGATAGATCAAGAAGAATGGAAGGAATTTGTATCAAAGAATCCAACTCTGATAAAGAACATGACTCTTCCATATTTGAAGGACATAACCATGGCTTTCCCAAGTTTTGTGCTGAGATCTGAAGCAGAGGATTAA

Network for GWHGAAZE003657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	73	94	0.045
PF13499.7	EF-hand_7	107	185	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.480
	SRR3591706	second leaf	0.979
	SRR3591707	mature leaf	1.265
	SRR3591708	Shoot apex	2.317
	SRR3591709	Stem	1.606
	SRR3591710	White floral bud	0.725
	SRR3591711	White flower	0.912
	SRR3591712	Green floral bud	0.581
	SRR3591713	Yellow flower	0.283
SRP173429	SRR8316895	Juvenile bud stage	1.529
	SRR8316896	Juvenile bud stage	1.058
	SRR8316897	Juvenile bud stage	0.148
	SRR8316894	Third green stage	0.286
	SRR8316900	Third green stage	0.984
	SRR8316901	Third green stage	0.459
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.264
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.147
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.456
	SRR8316907	Gold flowering stage	0.120
	SRR8316908	Gold flowering stage	0.606
SRP132670	SRR6706286	Control	0.991
	SRR6706287	Light intensity 50%	0.560
	SRR6706288	Light intensity 20%	0.532
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.590
	CNS0095593	Slightly white alabastrum(diploid) 2	0.504
	CNS0095594	Slightly white alabastrum(diploid) 3	0.120
	CNS0095595	Whole white alabastrum(diploid) 2	0.073
	CNS0095596	Whole white alabastrum(diploid) 3	0.599
	CNS0095597	Whole white alabastrum(diploid) 4	1.043
	CNS0095598	Silvery flower (diploied) 1	1.410
	CNS0095599	Silvery flower (diploied) 2	2.774
	CNS0095600	Silvery flower (diploied) 3	0.217
	CNS0095601	Golden flower (diploid) 1	0.836
	CNS0095602	Golden flower (diploid) 2	0.399
	CNS0095603	Golden flower (diploid) 3	0.408
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.951
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.323
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.487
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.943
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.627
	CNS0095610	Silvery flower (tetraploid) 1	0.323
	CNS0095611	Silvery flower (tetraploid) 2	0.485
	CNS0095612	Silvery flower (tetraploid) 3	0.274
	CNS0095613	Golden flower (tetraploid) 1	0.326
	CNS0095614	Golden flower (tetraploid) 2	0.862
	CNS0095615	Golden flower (tetraploid) 3	0.274
CRA001975	CRR073297	Stem 1	2.756
	CRR073298	Stem 2	1.526
	CRR073299	Stem 3	1.207
	CRR073300	Leaf 1	0.327
	CRR073301	Leaf 2	0.479
	CRR073302	Leaf 3	1.186
	CRR073303	Juvenile bud 1	0.503
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.074
	CRR073306	Third green 1	0.059
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.153
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.027
	CRR073314	Silver flowering 3	0.143
	CRR073315	Gold flowering 1	0.888
	CRR073316	Gold flowering 2	0.570
	CRR073317	Gold flowering 3	1.527
	CRR073318	Tawny withering 1	0.592
	CRR073319	Tawny withering 2	1.869
	CRR073320	Tawny withering 3	0.238