Detail information of GWHGAAZE003661


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009368656.10PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Pyrus x bretschneideri]
COGYP_673731.12E-96ATP-dependent protease ATP-binding subunit ClpX
trEMBLtr|A0A067EGG6|A0A067EGG6_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO54244.1}
TAIR10AT5G53350.16E-143CLP protease regulatory subunit X

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene101790206101795113-
GWHAAZE00000001mRNA101790206101795113-
GWHAAZE00000001exon101795060101795113-
GWHAAZE00000001exon101794665101794750-
GWHAAZE00000001exon101794211101794292-
GWHAAZE00000001exon101793095101793169-
GWHAAZE00000001exon101792921101792998-
GWHAAZE00000001exon101792136101792192-
GWHAAZE00000001exon101791962101792032-
GWHAAZE00000001exon101791770101791869-
GWHAAZE00000001exon101791579101791683-
GWHAAZE00000001exon101791208101791270-
GWHAAZE00000001exon101790967101791089-
GWHAAZE00000001exon101790635101790793-
GWHAAZE00000001exon101790206101790484-
GWHAAZE00000001CDS101795060101795113-
GWHAAZE00000001CDS101794665101794750-
GWHAAZE00000001CDS101794211101794292-
GWHAAZE00000001CDS101793095101793169-
GWHAAZE00000001CDS101792921101792998-
GWHAAZE00000001CDS101792136101792192-
GWHAAZE00000001CDS101791962101792032-
GWHAAZE00000001CDS101791770101791869-
GWHAAZE00000001CDS101791579101791683-
GWHAAZE00000001CDS101791208101791270-
GWHAAZE00000001CDS101790967101791089-
GWHAAZE00000001CDS101790635101790793-
GWHAAZE00000001CDS101790410101790484-
GWHAAZE00000001three_prime_UTR101790206101790409-
Transcript Sequence

Network for GWHGAAZE003661

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0274


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07724.15AAA_2622223.00E-32
PF10431.10ClpB_D2-small2292992.70E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03544clpX, CLPX Cell cycle - Caulobacter map04112

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.744
SRR3591706second leaf28.287
SRR3591707mature leaf41.585
SRR3591708Shoot apex24.163
SRR3591709Stem34.721
SRR3591710White floral bud33.457
SRR3591711White flower50.310
SRR3591712Green floral bud23.241
SRR3591713Yellow flower55.279
SRP173429 SRR8316895Juvenile bud stage 7.750
SRR8316896Juvenile bud stage 12.833
SRR8316897Juvenile bud stage 10.371
SRR8316894Third green stage 5.421
SRR8316900Third green stage 14.909
SRR8316901Third green stage 15.937
SRR8316898Complete white stage 7.976
SRR8316899Complete white stage 22.784
SRR8316903Complete white stage 10.755
SRR8316902Silver flowering stage12.031
SRR8316904Silver flowering stage14.254
SRR8316905Silver flowering stage7.381
SRR8316906Gold flowering stage 33.269
SRR8316907Gold flowering stage 28.536
SRR8316908Gold flowering stage 39.213
SRP132670SRR6706286Control16.980
SRR6706287Light intensity 50%17.247
SRR6706288Light intensity 20%16.868
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.454
CNS0095593Slightly white alabastrum(diploid) 214.429
CNS0095594Slightly white alabastrum(diploid) 310.595
CNS0095595Whole white alabastrum(diploid) 211.694
CNS0095596Whole white alabastrum(diploid) 38.547
CNS0095597Whole white alabastrum(diploid) 413.348
CNS0095598Silvery flower (diploied) 118.967
CNS0095599Silvery flower (diploied) 217.915
CNS0095600Silvery flower (diploied) 323.823
CNS0095601Golden flower (diploid) 118.736
CNS0095602Golden flower (diploid) 219.889
CNS0095603Golden flower (diploid) 321.172
CNS0095604Slightly white alabastrum(tetraploid) 122.653
CNS0095605Slightly white alabastrum(tetraploid) 221.395
CNS0095606Slightly white alabastrum(tetraploid) 334.086
CNS0095607Whole white alabastrum(tetraploid) 115.719
CNS0095608Whole white alabastrum(tetraploid) 218.433
CNS0095609Whole white alabastrum(tetraploid) 321.877
CNS0095610Silvery flower (tetraploid) 164.559
CNS0095611Silvery flower (tetraploid) 251.038
CNS0095612Silvery flower (tetraploid) 345.041
CNS0095613Golden flower (tetraploid) 160.406
CNS0095614Golden flower (tetraploid) 255.599
CNS0095615Golden flower (tetraploid) 339.639
CRA001975CRR073297Stem 112.932
CRR073298Stem 212.014
CRR073299Stem 311.720
CRR073300Leaf 117.210
CRR073301Leaf 215.292
CRR073302Leaf 313.073
CRR073303Juvenile bud 113.606
CRR073304Juvenile bud 211.218
CRR073305Juvenile bud 313.777
CRR073306Third green 14.383
CRR073307Third green 24.665
CRR073308Third green 36.432
CRR073309Second white 16.564
CRR073310Second white 29.214
CRR073311Second white 311.540
CRR073312Silver flowering 19.181
CRR073313Silver flowering 26.040
CRR073314Silver flowering 311.778
CRR073315Gold flowering 125.693
CRR073316Gold flowering 230.030
CRR073317Gold flowering 321.665
CRR073318Tawny withering 110.139
CRR073319Tawny withering 212.513
CRR073320Tawny withering 36.019