Gene detail

Detail information of GWHGAAZE003665

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05054.1	0	unnamed protein product [Coffea canephora]
COG	YP_002490578.1	8E-107	glycogen/starch synthase
Swissprot	tr\|P93568\|SSY1_SOLTU	0	Soluble starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|A0A068UA35\|A0A068UA35_COFCA	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}
TAIR10	AT5G24300.2	0	Glycogen/starch synthases, ADP-glucose type

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101845116	101852081	+
GWHAAZE00000001	mRNA	101845116	101852081	+
GWHAAZE00000001	exon	101845116	101845529	+
GWHAAZE00000001	exon	101847045	101847406	+
GWHAAZE00000001	exon	101847522	101847599	+
GWHAAZE00000001	exon	101847725	101847849	+
GWHAAZE00000001	exon	101848385	101848515	+
GWHAAZE00000001	exon	101848941	101849113	+
GWHAAZE00000001	exon	101849251	101849332	+
GWHAAZE00000001	exon	101850222	101850313	+
GWHAAZE00000001	exon	101850497	101850559	+
GWHAAZE00000001	exon	101850641	101850730	+
GWHAAZE00000001	exon	101850992	101851116	+
GWHAAZE00000001	exon	101851205	101851313	+
GWHAAZE00000001	exon	101851410	101851465	+
GWHAAZE00000001	exon	101851657	101851696	+
GWHAAZE00000001	exon	101851923	101852081	+
GWHAAZE00000001	five_prime_UTR	101845116	101845216	+
GWHAAZE00000001	CDS	101845217	101845529	+
GWHAAZE00000001	CDS	101847045	101847406	+
GWHAAZE00000001	CDS	101847522	101847599	+
GWHAAZE00000001	CDS	101847725	101847849	+
GWHAAZE00000001	CDS	101848385	101848515	+
GWHAAZE00000001	CDS	101848941	101849113	+
GWHAAZE00000001	CDS	101849251	101849332	+
GWHAAZE00000001	CDS	101850222	101850313	+
GWHAAZE00000001	CDS	101850497	101850559	+
GWHAAZE00000001	CDS	101850641	101850730	+
GWHAAZE00000001	CDS	101850992	101851116	+
GWHAAZE00000001	CDS	101851205	101851313	+
GWHAAZE00000001	CDS	101851410	101851465	+
GWHAAZE00000001	CDS	101851657	101851696	+
GWHAAZE00000001	CDS	101851923	101852081	+

Transcript Sequence
>GWHTAAZE003671 TGAGGCAGTTGTTTCTCTTTTTCTTAATTTGTCCCAATTCTCGATCCCTTACGTCCTCAATTGGGTCTACGACTTTATCTCCTTCTCCTTTTCTCTCTGTAATGGAGACTCTGCAACTCTCTCGTATTTTCTGCTGTAAATCATCTCTGAATCTGACTGAGACTCCTCTGAATTCGAGTGTACTTAGACAACTCGGTATTCCTTCCTTCTCGAGTCAAAGGAGTGCCAAAATTCGGTCTCTAGTTATTAGAACTACAACAACAAGAATAAGAAGATCAATTTCGAGGGCTAGGGCCGGAGGTTCCCCTCAAGATGGCTCTTCTACTGTCGAAGATGACAAGCAGGGCCTTTTAATGGGCAGTGAGAGGGATGATTCTGGTTCTATTGTTGGCTTCCAATTGTTTCCTCAATCTGGTGACAACAAAGTTATCGGATCGCATGAGAAAGCTACTAGTAGTAAAAAGGAAGTGACAGATGATGTAGAAAGAATCGATAAGAAACCTACCAAAGTAACATACAATATTGTTTTCGTTACTGCTGAAGCAGCGCCATATTCAAAGACAGGGGGCTTAGGAGATGTGTGTGGTTCTTTGCCTATAGCACTAGCAGCCCGTGGACATCGTGTAATGGTTGTCTCTCCTAGATATTTGCATGGTGGCCCTTCGGATAAAAAATATGCCGGTGCAACTGATATTGGTTGCCGAACCAAGATCTATTGCTCTGGAGGGGTGCAGGAGGTTTCTTTCTTCCATGAGTACAGGGCTGGTGTTGACTGGGTGTTTGTGGACCATCCTTCGTACCACCGTCCTGGAAATCCTTATGGTGATATTTTTGGTGCTTTTGGTGATAATCAGTTTCGGTTTACTTTACTTTGCCACGCAGCGTGCGAAGCTCCCTTAGTGCTTCCATTGGGAGGGTTCACTTATGGAGAGAAGTGTTTGTTCCTTGCTAACGACTGGCATGCAGGCTTGGTGCCAGTACTATTGGCAGCGAAGTATCGGCCATATGGAGTTTATAAGGATGCTCGAAGTATTGTTGTGATACATAATTTGGCACATCAGGTAGACATAATTTGTTCACTTGCTTATGTTCTGTATGATGGGATATCTGGCGTGGAGCCTGCAATAACCTACAGTAATTTGGGAGTGCCTCCTGAGTGGTATGGAGCTCTGGAATGGGTATTTCCCACGTGGGCAAGGACACATGCCCTTGATACTGGTGAGGCTGTCAATGTTCTAAAAGGTGCAATTGTGACGGCAGACCGGATTCTAACAGTTAGCCAGGGCTACTCTCAGGAAATAACAACTCCTGAAGGTGGATACGGGCTGCATGAGCTATTGACCAGTCGGAAGATAGTCATCAATGGGATCACAAATGGCATTGATGTTAATGAATGGGACCCATCTTCAGATCAGCATATTCCTTCCCATTACTCCATTAATGACCTTTCTGGAAAGGTTGAATGCAAGATTGCTTTGCAAAAGGAATTAGGTCTTCCAATTAAGCCTGATTGTCCATTGATTGGATTCATTGGGAGACTGGACTACCAGAAAGGTATTGATATAATTCTCTCAGCTACTCCAGAGCTGTTGCAAGATGATGTCCAGTTTGTAATGCTTGGGTCTGGGGAGAAACAGTATGAAGAATGGATGAGAGCGACAGAGTCATCTTTTAAAGACAAATATAGGGGATGGGTTGGATTTAATGTTCCTATTTCTCATCGTATAACAGCTGGTTGTGACATACTCTTAATGCCCTCAAGATTTGAGCCATGTGGTCTAAACCAGTTGTATGCAATGAGATACGGCACGGTACCTGTAGTTCATGGCACCGGAGGACTTAGAGATACAGTGGAGACATTTGACCCTTATGCTAACGAAGGAAGTGGAGAAGGGACTGGGTGGGCCTTCTCTCCCCTGACGAAGGAAAGTATGTTGTCTGCACTAAGGGTTGCGATTGGGACGTACAGAGAACACAAGTCTTCATGGGCAGGGTTGATTAAGAGAGGAATGGAAAGGGATTGCACGTGGGATAATGCTGCAGTTCAATACGAGCAAGTTTTTGAGTGGGCTTTCATAGATTCTCCTTATGTTAGCTGA

Network for GWHGAAZE003665

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08323.12	Glyco_transf_5	140	414	6.10E-61
PF00534.21	Glycos_transf_1	467	610	7.40E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00703	glgA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0004373	molecular_function	glycogen (starch) synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.807
	SRR3591706	second leaf	19.982
	SRR3591707	mature leaf	18.886
	SRR3591708	Shoot apex	8.086
	SRR3591709	Stem	4.472
	SRR3591710	White floral bud	10.602
	SRR3591711	White flower	7.351
	SRR3591712	Green floral bud	16.141
	SRR3591713	Yellow flower	6.586
SRP173429	SRR8316895	Juvenile bud stage	11.474
	SRR8316896	Juvenile bud stage	15.321
	SRR8316897	Juvenile bud stage	5.562
	SRR8316894	Third green stage	7.359
	SRR8316900	Third green stage	29.113
	SRR8316901	Third green stage	23.723
	SRR8316898	Complete white stage	6.342
	SRR8316899	Complete white stage	24.898
	SRR8316903	Complete white stage	9.875
	SRR8316902	Silver flowering stage	4.483
	SRR8316904	Silver flowering stage	4.637
	SRR8316905	Silver flowering stage	2.893
	SRR8316906	Gold flowering stage	8.328
	SRR8316907	Gold flowering stage	8.602
	SRR8316908	Gold flowering stage	6.835
SRP132670	SRR6706286	Control	19.326
	SRR6706287	Light intensity 50%	20.098
	SRR6706288	Light intensity 20%	23.516
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.841
	CNS0095593	Slightly white alabastrum(diploid) 2	11.528
	CNS0095594	Slightly white alabastrum(diploid) 3	9.507
	CNS0095595	Whole white alabastrum(diploid) 2	12.237
	CNS0095596	Whole white alabastrum(diploid) 3	13.772
	CNS0095597	Whole white alabastrum(diploid) 4	9.978
	CNS0095598	Silvery flower (diploied) 1	6.903
	CNS0095599	Silvery flower (diploied) 2	6.670
	CNS0095600	Silvery flower (diploied) 3	11.259
	CNS0095601	Golden flower (diploid) 1	5.107
	CNS0095602	Golden flower (diploid) 2	7.935
	CNS0095603	Golden flower (diploid) 3	7.848
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.693
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.488
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.729
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.347
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.302
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.402
	CNS0095610	Silvery flower (tetraploid) 1	12.938
	CNS0095611	Silvery flower (tetraploid) 2	12.392
	CNS0095612	Silvery flower (tetraploid) 3	9.667
	CNS0095613	Golden flower (tetraploid) 1	3.547
	CNS0095614	Golden flower (tetraploid) 2	6.120
	CNS0095615	Golden flower (tetraploid) 3	2.878
CRA001975	CRR073297	Stem 1	15.564
	CRR073298	Stem 2	16.043
	CRR073299	Stem 3	15.013
	CRR073300	Leaf 1	18.812
	CRR073301	Leaf 2	19.473
	CRR073302	Leaf 3	15.733
	CRR073303	Juvenile bud 1	18.973
	CRR073304	Juvenile bud 2	13.812
	CRR073305	Juvenile bud 3	19.438
	CRR073306	Third green 1	4.519
	CRR073307	Third green 2	2.781
	CRR073308	Third green 3	4.286
	CRR073309	Second white 1	4.628
	CRR073310	Second white 2	3.553
	CRR073311	Second white 3	2.237
	CRR073312	Silver flowering 1	2.111
	CRR073313	Silver flowering 2	2.043
	CRR073314	Silver flowering 3	1.461
	CRR073315	Gold flowering 1	23.823
	CRR073316	Gold flowering 2	43.885
	CRR073317	Gold flowering 3	26.048
	CRR073318	Tawny withering 1	5.971
	CRR073319	Tawny withering 2	4.834
	CRR073320	Tawny withering 3	5.603