Gene detail

Detail information of GWHGAAZE003675

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006441084.1	8.0118E-122	hypothetical protein CICLE_v10022148mg [Citrus clementina]
Swissprot	tr\|Q3HRP0\|CNBL7_ORYSJ	5E-108	Calcineurin B-like protein 7
trEMBL	tr\|A0A067EGH3\|A0A067EGH3_CITSI	3E-122	Uncharacterized protein {ECO:0000313\|EMBL:KDO54254.1}
TAIR10	AT5G24270.2	1E-84	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101965070	101966628	-
GWHAAZE00000001	mRNA	101965070	101966628	-
GWHAAZE00000001	exon	101966507	101966628	-
GWHAAZE00000001	exon	101966342	101966424	-
GWHAAZE00000001	exon	101966115	101966174	-
GWHAAZE00000001	exon	101965839	101965947	-
GWHAAZE00000001	exon	101965624	101965683	-
GWHAAZE00000001	exon	101965435	101965496	-
GWHAAZE00000001	exon	101965205	101965317	-
GWHAAZE00000001	exon	101965070	101965124	-
GWHAAZE00000001	five_prime_UTR	101966586	101966628	-
GWHAAZE00000001	CDS	101966507	101966585	-
GWHAAZE00000001	CDS	101966342	101966424	-
GWHAAZE00000001	CDS	101966115	101966174	-
GWHAAZE00000001	CDS	101965839	101965947	-
GWHAAZE00000001	CDS	101965624	101965683	-
GWHAAZE00000001	CDS	101965435	101965496	-
GWHAAZE00000001	CDS	101965205	101965317	-
GWHAAZE00000001	CDS	101965070	101965124	-

Transcript Sequence
>GWHTAAZE003681 TTGCGTTTAGCATGAACCTAAACATTGCAAGTTACCAAATTTGATGGGTTGCATTTGCTCAACAAAAACCAGACATTCGCCTGGATACGAGGAGCCTGCCATTCTTGCTGCTGAAACCCCATTCACAGTGAATGAAGTAGAGGCCTTGTATGAGCTATTTAAAAAATTAAGTAACTCCATTTTTACTGATGGGCTTATTCACAAGGAAGAGTTTCAGCTTGCACTCTTCAGGAACCAAAACAGGAAGAATCTCTTTGCAGACAGGATATTTGACATGTTTGATCTCAAACGCAATGGAGTTATTGAGTTTGGAGAGTTTGTCCGATCATTGGGCGTTTTTCACCCAAATGCACCTGCAGCAGAAAAAATTGCGTTTGCGTTTAGATTGTATGATCTGAGGCAAACTGGCTTTATTGAGAGAGAAGAGGCAAGTACACTATTGCATGAATCTGATCTTGTGCTCTCCGATGATGTTGTTGAAATGATTGTGGATAGGACATTCAGTGATGCGGATACAAAAGGTGATGGAAGGATAGATCAAGAAGAATGGAAGGAATTTGTATCAAAGAATCCAACTCTGATAAAGAACATGACTCTTCCATATTTGAAGGACATAACCATGGCTTTCCCAAGTTTTGTGCTGAGATCTGAAGCAGAGGATTAA

Network for GWHGAAZE003675

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	73	94	0.042
PF13499.7	EF-hand_7	107	173	1.90E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.979
	SRR3591706	second leaf	4.429
	SRR3591707	mature leaf	1.474
	SRR3591708	Shoot apex	6.813
	SRR3591709	Stem	6.142
	SRR3591710	White floral bud	1.685
	SRR3591711	White flower	2.407
	SRR3591712	Green floral bud	1.750
	SRR3591713	Yellow flower	2.020
SRP173429	SRR8316895	Juvenile bud stage	1.687
	SRR8316896	Juvenile bud stage	2.374
	SRR8316897	Juvenile bud stage	0.076
	SRR8316894	Third green stage	0.406
	SRR8316900	Third green stage	1.709
	SRR8316901	Third green stage	1.237
	SRR8316898	Complete white stage	0.292
	SRR8316899	Complete white stage	1.125
	SRR8316903	Complete white stage	0.550
	SRR8316902	Silver flowering stage	0.596
	SRR8316904	Silver flowering stage	1.392
	SRR8316905	Silver flowering stage	0.516
	SRR8316906	Gold flowering stage	1.781
	SRR8316907	Gold flowering stage	1.709
	SRR8316908	Gold flowering stage	0.962
SRP132670	SRR6706286	Control	1.859
	SRR6706287	Light intensity 50%	1.642
	SRR6706288	Light intensity 20%	1.763
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.032
	CNS0095593	Slightly white alabastrum(diploid) 2	0.963
	CNS0095594	Slightly white alabastrum(diploid) 3	0.644
	CNS0095595	Whole white alabastrum(diploid) 2	1.531
	CNS0095596	Whole white alabastrum(diploid) 3	1.577
	CNS0095597	Whole white alabastrum(diploid) 4	1.621
	CNS0095598	Silvery flower (diploied) 1	1.261
	CNS0095599	Silvery flower (diploied) 2	1.647
	CNS0095600	Silvery flower (diploied) 3	0.897
	CNS0095601	Golden flower (diploid) 1	1.381
	CNS0095602	Golden flower (diploid) 2	0.996
	CNS0095603	Golden flower (diploid) 3	1.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.065
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.120
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.036
	CNS0095610	Silvery flower (tetraploid) 1	0.117
	CNS0095611	Silvery flower (tetraploid) 2	0.054
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.122
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.660
	CRR073298	Stem 2	1.288
	CRR073299	Stem 3	0.697
	CRR073300	Leaf 1	1.021
	CRR073301	Leaf 2	1.346
	CRR073302	Leaf 3	0.309
	CRR073303	Juvenile bud 1	0.482
	CRR073304	Juvenile bud 2	0.100
	CRR073305	Juvenile bud 3	0.092
	CRR073306	Third green 1	0.003
	CRR073307	Third green 2	0.180
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.456
	CRR073311	Second white 3	0.422
	CRR073312	Silver flowering 1	0.637
	CRR073313	Silver flowering 2	0.642
	CRR073314	Silver flowering 3	0.234
	CRR073315	Gold flowering 1	0.138
	CRR073316	Gold flowering 2	0.494
	CRR073317	Gold flowering 3	0.195
	CRR073318	Tawny withering 1	1.476
	CRR073319	Tawny withering 2	1.344
	CRR073320	Tawny withering 3	0.843