Detail information of GWHGAAZE003688


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010273624.11.3604E-79PREDICTED: 50S ribosomal protein L9, chloroplastic [Nelumbo nucifera]
COGYP_828289.10.000000450S ribosomal protein L9
trEMBLtr|A0A068V096|A0A068V096_COFCA1E-77Coffea canephora DH200=94 genomic scaffold, scaffold_79 {ECO:0000313|EMBL:CDP14086.1}
TAIR10AT5G53070.11E-44Ribosomal protein L9/RNase H1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene102185902102189170-
GWHAAZE00000001mRNA102185902102189170-
GWHAAZE00000001exon102185902102186021-
GWHAAZE00000001exon102186374102186499-
GWHAAZE00000001exon102186776102186847-
GWHAAZE00000001exon102187128102187209-
GWHAAZE00000001exon102187550102187653-
GWHAAZE00000001exon102188469102188633-
GWHAAZE00000001exon102189099102189170-
GWHAAZE00000001CDS102189099102189170-
GWHAAZE00000001CDS102188469102188633-
GWHAAZE00000001CDS102187550102187653-
GWHAAZE00000001CDS102187128102187209-
GWHAAZE00000001CDS102186776102186847-
GWHAAZE00000001CDS102186374102186499-
GWHAAZE00000001CDS102185902102186021-
Transcript Sequence

Network for GWHGAAZE003688

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01281.20Ribosomal_L9_N19553.10E-11
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02939RP-L9, MRPL9, rplI Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.129
SRR3591706second leaf4.131
SRR3591707mature leaf4.755
SRR3591708Shoot apex5.309
SRR3591709Stem3.812
SRR3591710White floral bud4.451
SRR3591711White flower2.779
SRR3591712Green floral bud4.588
SRR3591713Yellow flower1.821
SRP173429 SRR8316895Juvenile bud stage 1.620
SRR8316896Juvenile bud stage 2.789
SRR8316897Juvenile bud stage 1.520
SRR8316894Third green stage 1.602
SRR8316900Third green stage 2.990
SRR8316901Third green stage 2.438
SRR8316898Complete white stage 0.218
SRR8316899Complete white stage 2.344
SRR8316903Complete white stage 1.010
SRR8316902Silver flowering stage0.404
SRR8316904Silver flowering stage0.506
SRR8316905Silver flowering stage0.250
SRR8316906Gold flowering stage 0.127
SRR8316907Gold flowering stage 0.186
SRR8316908Gold flowering stage 0.201
SRP132670SRR6706286Control2.429
SRR6706287Light intensity 50%2.589
SRR6706288Light intensity 20%2.890
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.965
CNS0095593Slightly white alabastrum(diploid) 23.873
CNS0095594Slightly white alabastrum(diploid) 31.814
CNS0095595Whole white alabastrum(diploid) 24.064
CNS0095596Whole white alabastrum(diploid) 31.549
CNS0095597Whole white alabastrum(diploid) 42.146
CNS0095598Silvery flower (diploied) 12.883
CNS0095599Silvery flower (diploied) 21.994
CNS0095600Silvery flower (diploied) 30.439
CNS0095601Golden flower (diploid) 13.069
CNS0095602Golden flower (diploid) 20.757
CNS0095603Golden flower (diploid) 30.689
CNS0095604Slightly white alabastrum(tetraploid) 11.370
CNS0095605Slightly white alabastrum(tetraploid) 22.153
CNS0095606Slightly white alabastrum(tetraploid) 31.932
CNS0095607Whole white alabastrum(tetraploid) 11.075
CNS0095608Whole white alabastrum(tetraploid) 20.824
CNS0095609Whole white alabastrum(tetraploid) 33.213
CNS0095610Silvery flower (tetraploid) 10.251
CNS0095611Silvery flower (tetraploid) 20.498
CNS0095612Silvery flower (tetraploid) 31.032
CNS0095613Golden flower (tetraploid) 10.079
CNS0095614Golden flower (tetraploid) 20.543
CNS0095615Golden flower (tetraploid) 30.076
CRA001975CRR073297Stem 12.448
CRR073298Stem 22.587
CRR073299Stem 31.800
CRR073300Leaf 13.463
CRR073301Leaf 21.991
CRR073302Leaf 30.402
CRR073303Juvenile bud 11.469
CRR073304Juvenile bud 20.834
CRR073305Juvenile bud 30.182
CRR073306Third green 10.000
CRR073307Third green 20.087
CRR073308Third green 30.068
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.086
CRR073313Silver flowering 20.329
CRR073314Silver flowering 30.171
CRR073315Gold flowering 10.084
CRR073316Gold flowering 20.350
CRR073317Gold flowering 30.487
CRR073318Tawny withering 11.356
CRR073319Tawny withering 20.282
CRR073320Tawny withering 30.674