Detail information of GWHGAAZE003690


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271917.20PREDICTED: WD repeat-containing protein YMR102C [Vitis vinifera]
COGYP_003265879.11E-16serine/threonine protein kinase with WD40 repeats
Swissprottr|P49178|GBB_MAIZE0.00000001Guanine nucleotide-binding protein subunit beta
trEMBLtr|F6H7B5|F6H7B5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48060.1}
TAIR10AT5G53500.15E-140Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene102236058102239685-
GWHAAZE00000001mRNA102236058102239685-
GWHAAZE00000001exon102236058102236575-
GWHAAZE00000001exon102237347102237440-
GWHAAZE00000001exon102237538102237617-
GWHAAZE00000001exon102237979102238030-
GWHAAZE00000001exon102238134102238291-
GWHAAZE00000001exon102238378102238459-
GWHAAZE00000001exon102238651102239685-
GWHAAZE00000001CDS102238651102239685-
GWHAAZE00000001CDS102238378102238459-
GWHAAZE00000001CDS102238134102238291-
GWHAAZE00000001CDS102237979102238030-
GWHAAZE00000001CDS102237538102237617-
GWHAAZE00000001CDS102237347102237440-
GWHAAZE00000001CDS102236058102236575-
Transcript Sequence

Network for GWHGAAZE003690

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402542840.0002
PF00400.33WD403653985.60E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.490
SRR3591706second leaf7.590
SRR3591707mature leaf0.671
SRR3591708Shoot apex22.192
SRR3591709Stem19.474
SRR3591710White floral bud5.435
SRR3591711White flower5.649
SRR3591712Green floral bud12.270
SRR3591713Yellow flower2.834
SRP173429 SRR8316895Juvenile bud stage 7.290
SRR8316896Juvenile bud stage 8.134
SRR8316897Juvenile bud stage 3.793
SRR8316894Third green stage 4.428
SRR8316900Third green stage 9.047
SRR8316901Third green stage 8.430
SRR8316898Complete white stage 0.644
SRR8316899Complete white stage 10.427
SRR8316903Complete white stage 1.013
SRR8316902Silver flowering stage0.281
SRR8316904Silver flowering stage0.462
SRR8316905Silver flowering stage0.145
SRR8316906Gold flowering stage 0.490
SRR8316907Gold flowering stage 0.335
SRR8316908Gold flowering stage 2.420
SRP132670SRR6706286Control10.843
SRR6706287Light intensity 50%12.689
SRR6706288Light intensity 20%15.623
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.507
CNS0095593Slightly white alabastrum(diploid) 26.831
CNS0095594Slightly white alabastrum(diploid) 32.495
CNS0095595Whole white alabastrum(diploid) 25.733
CNS0095596Whole white alabastrum(diploid) 34.685
CNS0095597Whole white alabastrum(diploid) 44.146
CNS0095598Silvery flower (diploied) 14.024
CNS0095599Silvery flower (diploied) 22.898
CNS0095600Silvery flower (diploied) 31.752
CNS0095601Golden flower (diploid) 13.568
CNS0095602Golden flower (diploid) 23.017
CNS0095603Golden flower (diploid) 33.312
CNS0095604Slightly white alabastrum(tetraploid) 112.609
CNS0095605Slightly white alabastrum(tetraploid) 28.786
CNS0095606Slightly white alabastrum(tetraploid) 324.817
CNS0095607Whole white alabastrum(tetraploid) 14.720
CNS0095608Whole white alabastrum(tetraploid) 23.999
CNS0095609Whole white alabastrum(tetraploid) 314.160
CNS0095610Silvery flower (tetraploid) 10.640
CNS0095611Silvery flower (tetraploid) 21.806
CNS0095612Silvery flower (tetraploid) 30.992
CNS0095613Golden flower (tetraploid) 10.738
CNS0095614Golden flower (tetraploid) 21.065
CNS0095615Golden flower (tetraploid) 30.221
CRA001975CRR073297Stem 112.224
CRR073298Stem 29.021
CRR073299Stem 38.036
CRR073300Leaf 112.049
CRR073301Leaf 28.295
CRR073302Leaf 35.587
CRR073303Juvenile bud 13.705
CRR073304Juvenile bud 21.869
CRR073305Juvenile bud 34.270
CRR073306Third green 10.256
CRR073307Third green 20.232
CRR073308Third green 30.141
CRR073309Second white 10.198
CRR073310Second white 20.104
CRR073311Second white 30.106
CRR073312Silver flowering 10.217
CRR073313Silver flowering 20.045
CRR073314Silver flowering 30.223
CRR073315Gold flowering 11.122
CRR073316Gold flowering 21.145
CRR073317Gold flowering 30.260
CRR073318Tawny withering 12.363
CRR073319Tawny withering 23.493
CRR073320Tawny withering 32.380