Gene detail

Detail information of GWHGAAZE003706

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU45302.1	2.07795E-51	hypothetical protein MIMGU_mgv1a012383mg [Erythranthe guttata]
COG	YP_002487898.1	9E-20	6-phosphogluconolactonase
Swissprot	tr\|Q6Z9C3\|6PGL3_ORYSJ	8E-45	Probable 6-phosphogluconolactonase 3, chloroplastic (Precursor)
trEMBL	tr\|K3YIK4\|K3YIK4_SETIT	2E-52	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si014073m}
TAIR10	AT5G24400.1	6E-34	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	102568644	102573088	-
GWHAAZE00000001	mRNA	102568644	102573088	-
GWHAAZE00000001	exon	102568644	102568889	-
GWHAAZE00000001	exon	102569341	102569476	-
GWHAAZE00000001	exon	102570983	102571418	-
GWHAAZE00000001	exon	102572953	102573088	-
GWHAAZE00000001	CDS	102572953	102573088	-
GWHAAZE00000001	CDS	102570983	102571418	-
GWHAAZE00000001	CDS	102569341	102569476	-
GWHAAZE00000001	CDS	102568644	102568889	-

Transcript Sequence
>GWHTAAZE003712 ATGGCAAGGGTGGGCAAGAAAATTCTCGAGTTCGATTCCGAAGAACATGTGGCTGTGGATCTGTCAAAAAAGATTTCCGAACTCTCAGCTAAATATATCAAAGAAAAAGGTTCTTTCACTGTTGTTCTCTCTGGAGGAATTCCAAAGTCTAATATTTATTGCATAAAGGAAAAAGTGACACCGGAGGAAGCAGCGGATGATTATGAGGCCCGTCTGAAGCAATTGGTGGCCAACAAGACATTACCACTTTCACCAAATGGTTTCCCAATTTTTGACTTGATGCTGGTAGGAATGGGGCCAGAGGGACATGTAGCTTCGCTCTTCTGTTGGCATTTTCAGCGCTATGAGACCCAGAGGTGGATTACCTTCATAAAAGCCTCGCCTAAACCACCAGCGGAGAGGATCACAATGACGCTTCCAGTAATAAACGCGTCTAAGCATATAGCAATGGTGGTGACTGGAAAGGAGGTGGCAGACGCCGTCAGAGTGGCACTGCATGAGAGTGATAAAGGTTTTGCTTATATTCCGCTGCCTGTTCAAATGGTTTCACCTACTAATGGGGAGCTCACTTGGAAATTTGCGGAGCCACCCAACATTGATACTGTGGATTGGTCGAAATGGCTCGTCTTTTTTCTGGATGAGAGGGTTGTTCCTCTTAATCACCGCGACTGCAACTATAAGCTTGCCTATGATGGCTTTCTGTGCAAGGTTACCTTCATCAAGGACTCGCCTAAACCTCCGGCCCCGAGGATAACATTCACCTTTAGCAATGGTGGTGACTGGGAAGGAGGTAGCGGATGCAGTGAAAGTGGCACTGGGGAGTCATTGGTGTGTTGTGCTCAAATTCCACTGCCTGTTGAAATGGGTTCACCTTGTGACGATGATGGGAACTCACTTGGTTTTTGGATAAGGATGCTGTTTCAAAGTGTAGAGGTCTGCAGTCAACAAATCTAA

Network for GWHGAAZE003706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01182.21	Glucosamine_iso	47	191	4.40E-35
PF01182.21	Glucosamine_iso	201	237	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01057	PGLS, pgl, devB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0017057	molecular_function	6-phosphogluconolactonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.319
	SRR3591706	second leaf	4.878
	SRR3591707	mature leaf	6.508
	SRR3591708	Shoot apex	9.948
	SRR3591709	Stem	117.472
	SRR3591710	White floral bud	28.455
	SRR3591711	White flower	50.531
	SRR3591712	Green floral bud	24.668
	SRR3591713	Yellow flower	9.437
SRP173429	SRR8316895	Juvenile bud stage	15.127
	SRR8316896	Juvenile bud stage	10.668
	SRR8316897	Juvenile bud stage	9.191
	SRR8316894	Third green stage	1.788
	SRR8316900	Third green stage	3.277
	SRR8316901	Third green stage	2.335
	SRR8316898	Complete white stage	0.615
	SRR8316899	Complete white stage	4.933
	SRR8316903	Complete white stage	3.474
	SRR8316902	Silver flowering stage	0.791
	SRR8316904	Silver flowering stage	0.679
	SRR8316905	Silver flowering stage	0.130
	SRR8316906	Gold flowering stage	0.151
	SRR8316907	Gold flowering stage	1.387
	SRR8316908	Gold flowering stage	1.608
SRP132670	SRR6706286	Control	3.071
	SRR6706287	Light intensity 50%	3.462
	SRR6706288	Light intensity 20%	1.531
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.573
	CNS0095593	Slightly white alabastrum(diploid) 2	11.360
	CNS0095594	Slightly white alabastrum(diploid) 3	6.121
	CNS0095595	Whole white alabastrum(diploid) 2	8.925
	CNS0095596	Whole white alabastrum(diploid) 3	0.618
	CNS0095597	Whole white alabastrum(diploid) 4	3.761
	CNS0095598	Silvery flower (diploied) 1	55.561
	CNS0095599	Silvery flower (diploied) 2	28.946
	CNS0095600	Silvery flower (diploied) 3	6.236
	CNS0095601	Golden flower (diploid) 1	41.906
	CNS0095602	Golden flower (diploid) 2	26.524
	CNS0095603	Golden flower (diploid) 3	27.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.930
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.607
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.176
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.486
	CNS0095610	Silvery flower (tetraploid) 1	0.653
	CNS0095611	Silvery flower (tetraploid) 2	2.630
	CNS0095612	Silvery flower (tetraploid) 3	2.653
	CNS0095613	Golden flower (tetraploid) 1	0.491
	CNS0095614	Golden flower (tetraploid) 2	0.713
	CNS0095615	Golden flower (tetraploid) 3	0.188
CRA001975	CRR073297	Stem 1	9.203
	CRR073298	Stem 2	6.484
	CRR073299	Stem 3	24.807
	CRR073300	Leaf 1	0.983
	CRR073301	Leaf 2	2.076
	CRR073302	Leaf 3	0.919
	CRR073303	Juvenile bud 1	0.223
	CRR073304	Juvenile bud 2	0.634
	CRR073305	Juvenile bud 3	2.064
	CRR073306	Third green 1	0.233
	CRR073307	Third green 2	0.220
	CRR073308	Third green 3	0.294
	CRR073309	Second white 1	0.067
	CRR073310	Second white 2	0.185
	CRR073311	Second white 3	0.006
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.139
	CRR073314	Silver flowering 3	0.137
	CRR073315	Gold flowering 1	2.624
	CRR073316	Gold flowering 2	4.667
	CRR073317	Gold flowering 3	5.317
	CRR073318	Tawny withering 1	133.463
	CRR073319	Tawny withering 2	100.957
	CRR073320	Tawny withering 3	163.954