Gene detail

Detail information of GWHGAAZE003712

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271355.3	5.75537E-46	PREDICTED: growth-regulating factor 4 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q6AWY6\|GRF3_ORYSJ	4E-36	Growth-regulating factor 3
trEMBL	tr\|F6H761\|F6H761_VITVI	2E-46	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48084.1}
TAIR10	AT4G37740.1	4E-24	growth-regulating factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	102721976	102722941	+
GWHAAZE00000001	mRNA	102721976	102722941	+
GWHAAZE00000001	exon	102721976	102722153	+
GWHAAZE00000001	exon	102722385	102722740	+
GWHAAZE00000001	exon	102722867	102722941	+
GWHAAZE00000001	CDS	102721976	102722153	+
GWHAAZE00000001	CDS	102722385	102722740	+
GWHAAZE00000001	CDS	102722867	102722941	+

Transcript Sequence
>GWHTAAZE003718 ATGGCGGCAGCAGCAGCTTTGGGGAGTGGTTTTACATGGGCTCAGTGGAAGGAGCTTGAGAGGCAAGCTATGATCTTTAAGTACATGGTGGCCTCTCTACCTGTCCCTCCTCATCTCCTCTTACCCCTTACCCCCAATCTCTTTGCACCAGACATCTCTGCTAATCCCCACTCACCCTTTATTGGCGGTTCTTCATCCTCCTCTTTGTCATCATCTTCTATGTTCAACCTGCGGTTTTCCAAAGATAAAGATCCGGAGCCGGGGAGGTGCAAGAGAACGGACGGCAAGAAATGGAGGTGTTCCAGAGATGTGGCCCCCCATCAGAAGTACTGTGAGCGTCACATGAACAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAATCTCAAATTCAACCCTCCTCTCCCAACAACAAAAGACCCGTCTTCCCCACAAATATAATACCCCTCTTCCTCCTCCTCCAAACATTCCAAACCCAACTCTTCTTCAGCCCAATCTTTTGGGTTCCCCAAATCAAACCCCTTCAGCGTTACTTGGGGCTTGGATTGGATGACGGAAAGAGAAATGCTTACAAGCGAGCAACAATGGCAACATTTCATGCCGTCGAGTAG

Network for GWHGAAZE003712

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	11	43	1.30E-14
PF08879.11	WRC	85	127	1.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.608
	SRR3591706	second leaf	20.379
	SRR3591707	mature leaf	34.700
	SRR3591708	Shoot apex	41.269
	SRR3591709	Stem	6.662
	SRR3591710	White floral bud	4.921
	SRR3591711	White flower	6.891
	SRR3591712	Green floral bud	1.873
	SRR3591713	Yellow flower	2.007
SRP173429	SRR8316895	Juvenile bud stage	4.014
	SRR8316896	Juvenile bud stage	3.140
	SRR8316897	Juvenile bud stage	0.384
	SRR8316894	Third green stage	0.426
	SRR8316900	Third green stage	0.144
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.314
	SRR8316903	Complete white stage	0.100
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.080
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.133
	SRR8316907	Gold flowering stage	0.042
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.126
	SRR6706287	Light intensity 50%	0.910
	SRR6706288	Light intensity 20%	1.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.292
	CNS0095593	Slightly white alabastrum(diploid) 2	3.319
	CNS0095594	Slightly white alabastrum(diploid) 3	1.954
	CNS0095595	Whole white alabastrum(diploid) 2	2.913
	CNS0095596	Whole white alabastrum(diploid) 3	0.439
	CNS0095597	Whole white alabastrum(diploid) 4	3.267
	CNS0095598	Silvery flower (diploied) 1	29.080
	CNS0095599	Silvery flower (diploied) 2	24.722
	CNS0095600	Silvery flower (diploied) 3	5.461
	CNS0095601	Golden flower (diploid) 1	52.395
	CNS0095602	Golden flower (diploid) 2	14.911
	CNS0095603	Golden flower (diploid) 3	14.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.919
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.192
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.137
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.313
	CNS0095610	Silvery flower (tetraploid) 1	0.118
	CNS0095611	Silvery flower (tetraploid) 2	2.469
	CNS0095612	Silvery flower (tetraploid) 3	0.882
	CNS0095613	Golden flower (tetraploid) 1	0.537
	CNS0095614	Golden flower (tetraploid) 2	0.724
	CNS0095615	Golden flower (tetraploid) 3	0.092
CRA001975	CRR073297	Stem 1	4.914
	CRR073298	Stem 2	2.842
	CRR073299	Stem 3	5.629
	CRR073300	Leaf 1	0.692
	CRR073301	Leaf 2	0.488
	CRR073302	Leaf 3	0.048
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.011
	CRR073305	Juvenile bud 3	0.734
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.270
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.188
	CRR073314	Silver flowering 3	0.083
	CRR073315	Gold flowering 1	10.427
	CRR073316	Gold flowering 2	12.659
	CRR073317	Gold flowering 3	4.717
	CRR073318	Tawny withering 1	3.517
	CRR073319	Tawny withering 2	4.304
	CRR073320	Tawny withering 3	4.039