Gene detail

Detail information of GWHGAAZE003716

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009604584.1	0	PREDICTED: uncharacterized protein LOC104099336 [Nicotiana tomentosiformis]
trEMBL	tr\|M0ZIR2\|M0ZIR2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400001587}
TAIR10	AT5G54180.1	6E-125	plastid transcriptionally active 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	102781430	102782704	+
GWHAAZE00000001	mRNA	102781430	102782704	+
GWHAAZE00000001	exon	102781430	102782704	+
GWHAAZE00000001	CDS	102781430	102782704	+

Transcript Sequence
>GWHTAAZE003722 ATGTTGGTTGCACTCTTACAAGAGATTGGTATTGATCAAAAAGGAGCTAAACTACTGTTGGACAATCACCCTGTTCTAAGATTAACCCCTTTCAATTCCGTACGTACCCGAATTCAATCTTTGCAATCCCTTGGAATCAATGGCATTGTGCTTTCTCGTTTAATTATGAAGCGACCAGATACATTAACAGCTAAAGAAATCGACTCTTTGATATGCTTTTTTCACGATGATTTAGAGGGAAAGATCGAACCCGATCAAATTAGACGCCTTTTAAATGCCACAGAACCCAGTTTGCTTTTGGGTTTTCAAGGAAAAGTTAGGCTGCTGCTTCATCATGGGATCCCCCCACTGAATCTTGCCTTTGTTCTCAATAAAGTTAACCTAACAAAGGCCTTGTGTCTCAAGCCGTGTGAAGAGATTGAGAAAACATTTACTTTCTTGAATCGTTTTGGTGGAGTTGATCTAATCCTTCGCCGTCCTGCAATTCTCGATTACGATCTGGAGAGCCAGCTAATTCCAAGAATTGAGTTTATTTTGGAGTTGAGTGGGGGAGATGAGGAGGCCACATCAACTGTGTTGCGTAAACTACCATCCATCTTAGCTTACACCTCAGAGCATCTTGAAGATCATGTCAAGTTCTTGAAATCGTTTGCTGGTTTAAGTGATGAAGAAGTATTTCGGATTATTCTCGTGTATCCAAATGTGTTTAGTGCCAGCAGGAAGAGGAAATTGCATCCTAGAATCGGTTTTCTTAAGCAATGCGGGTTGAGTTCCAGTGAGATATTCAAGTTCTTGATGAGAGGTCCTTTGTATCTTAGCCTGTCCTTTGACCTGAATCTTGCGCACAAGCTGGTTTTCTTGGTGAAGATTGGCTATCAAAACAACACCAAGGAACTGGCACTGGCTATGGGAGCTGTGACCAGATGCAGTTGCAAGAATATGCAGGAGGTTATTAGCCTATTCTTGAACTATGGGCTAACTCCACAAGACATTCTTGCCATGAGCAAGAAGCATCCGCAGGTACTGCAATACAATAGTACGTCTTTAGATGAGAAGATGGATTACTTGATTGAGGAAATGGGCCGTGAGGTCAGAGAGCTATTATCGTTTCCTGCATTTCTTGGTTACAATTTTGATCACAGGATTAAGCAGAGGTATGAAGTGAAGAAGAAAATATTAGGCGAAGGGATGTCCTTAAACAAGCTCTTGAGTGTGTCAACAGAGAGCTTCTCTTCGAAGAAGAAGAAAAAGAGAGACTCCAGCAAATGTGACTGA

Network for GWHGAAZE003716

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	4	289	5.70E-25
PF02536.15	mTERF	306	410	1.60E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.789
	SRR3591706	second leaf	10.091
	SRR3591707	mature leaf	11.824
	SRR3591708	Shoot apex	9.360
	SRR3591709	Stem	4.652
	SRR3591710	White floral bud	1.846
	SRR3591711	White flower	4.062
	SRR3591712	Green floral bud	5.138
	SRR3591713	Yellow flower	1.572
SRP173429	SRR8316895	Juvenile bud stage	2.077
	SRR8316896	Juvenile bud stage	4.562
	SRR8316897	Juvenile bud stage	1.145
	SRR8316894	Third green stage	1.800
	SRR8316900	Third green stage	3.816
	SRR8316901	Third green stage	3.365
	SRR8316898	Complete white stage	0.546
	SRR8316899	Complete white stage	2.657
	SRR8316903	Complete white stage	0.613
	SRR8316902	Silver flowering stage	0.259
	SRR8316904	Silver flowering stage	0.580
	SRR8316905	Silver flowering stage	0.182
	SRR8316906	Gold flowering stage	0.688
	SRR8316907	Gold flowering stage	0.639
	SRR8316908	Gold flowering stage	0.999
SRP132670	SRR6706286	Control	2.217
	SRR6706287	Light intensity 50%	2.298
	SRR6706288	Light intensity 20%	2.539
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.289
	CNS0095593	Slightly white alabastrum(diploid) 2	1.607
	CNS0095594	Slightly white alabastrum(diploid) 3	2.094
	CNS0095595	Whole white alabastrum(diploid) 2	1.952
	CNS0095596	Whole white alabastrum(diploid) 3	1.291
	CNS0095597	Whole white alabastrum(diploid) 4	1.779
	CNS0095598	Silvery flower (diploied) 1	4.239
	CNS0095599	Silvery flower (diploied) 2	1.872
	CNS0095600	Silvery flower (diploied) 3	1.816
	CNS0095601	Golden flower (diploid) 1	2.973
	CNS0095602	Golden flower (diploid) 2	2.162
	CNS0095603	Golden flower (diploid) 3	2.515
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.401
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.569
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.394
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.418
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.923
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.064
	CNS0095610	Silvery flower (tetraploid) 1	2.427
	CNS0095611	Silvery flower (tetraploid) 2	2.883
	CNS0095612	Silvery flower (tetraploid) 3	0.755
	CNS0095613	Golden flower (tetraploid) 1	0.440
	CNS0095614	Golden flower (tetraploid) 2	1.427
	CNS0095615	Golden flower (tetraploid) 3	0.429
CRA001975	CRR073297	Stem 1	4.242
	CRR073298	Stem 2	4.199
	CRR073299	Stem 3	4.549
	CRR073300	Leaf 1	2.644
	CRR073301	Leaf 2	3.266
	CRR073302	Leaf 3	2.365
	CRR073303	Juvenile bud 1	2.260
	CRR073304	Juvenile bud 2	2.158
	CRR073305	Juvenile bud 3	2.673
	CRR073306	Third green 1	0.516
	CRR073307	Third green 2	0.181
	CRR073308	Third green 3	0.516
	CRR073309	Second white 1	0.378
	CRR073310	Second white 2	0.364
	CRR073311	Second white 3	0.333
	CRR073312	Silver flowering 1	0.148
	CRR073313	Silver flowering 2	0.434
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.042
	CRR073316	Gold flowering 2	10.876
	CRR073317	Gold flowering 3	9.696
	CRR073318	Tawny withering 1	1.747
	CRR073319	Tawny withering 2	2.369
	CRR073320	Tawny withering 3	5.023