Gene detail

Detail information of GWHGAAZE003727

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075874.1	3.6434E-148	PREDICTED: NAC domain-containing protein 45 [Sesamum indicum]
Swissprot	tr\|Q9FFI5\|NAC86_ARATH	2E-51	NAC domain-containing protein 86 {ECO:0000312\|EMBL:AED92405.1}
trEMBL	tr\|A0A068U8Z4\|A0A068U8Z4_COFCA	5E-135	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP04976.1}
TAIR10	AT3G49530.1	1E-71	NAC domain containing protein 62

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	102982811	102986008	-
GWHAAZE00000001	mRNA	102982811	102986008	-
GWHAAZE00000001	exon	102982811	102983182	-
GWHAAZE00000001	exon	102983271	102983714	-
GWHAAZE00000001	exon	102983910	102984332	-
GWHAAZE00000001	exon	102984439	102984750	-
GWHAAZE00000001	exon	102985385	102985680	-
GWHAAZE00000001	exon	102985840	102986008	-
GWHAAZE00000001	CDS	102985840	102986008	-
GWHAAZE00000001	CDS	102985385	102985680	-
GWHAAZE00000001	CDS	102984439	102984750	-
GWHAAZE00000001	CDS	102983910	102984332	-
GWHAAZE00000001	CDS	102983271	102983714	-
GWHAAZE00000001	CDS	102982913	102983182	-
GWHAAZE00000001	three_prime_UTR	102982811	102982912	-

Transcript Sequence
>GWHTAAZE003733 ATGACCGAGGAGTTGCTTTCGAAATCTCTGCCGGTGGGGTTCCGTTTCCGTCCGACGGACGAAGAGCTCATAGATCACTACTTGCGCTTGAAGATCAATGGTCATGACGACAAAGTATCTGTTATTCGGGAGGTTGATGTTTGTAAATGGGAACCTTGGGACTTACCTCATTTATCGATGATCGAATCTGCAGACAATGAGTGGTTCTTCTTCTGTCCCAAGGATCGCAAGTATCAAAACGGAGAGCGATTGAACAGAGCAACGGAGGCAGGGTACTGGAAAGCTACAGGTAGAGACAGATTGATAAAGTCGTCTAGCAAGGGGGGATTGGGACCGAAGGTAATTGGCCGGAAGAAAACTCTAGTCTTTTATACGGGCCGAGCTCCTAAGGGTGAACGCACTCACTGGGTTATCCACGAGTACTCTCCTACCGATAACTCTCTCGACGGCACTCACCCTGGTCAGAGTGCCTTTGTACTGTGTCGTCTATTTAAGAAGCATGATGGGAAGCTTGATGACAACACTGAAAGTTCAAACTGTGAAGAAGGTGACCATATTGGTTCTCCTAGTGTAGTCAAATCTCCTGCGGTAGATACACCATCAGAGCCCGTAACTCCTATGGTGGGTGGCCAAGGGCAAACAAAGCCTTCAAGTGTTGAAAGATTTCAAGCTGAAGACTCTAAGAGAGTAATCGTTGACTCTCCATTGCCTTTAGAGTTGCAAGGCAATTTGCCAACTAATCCTGCTGCAGAAGATCAGTTACTGGATTCTATTGAGCCGGATCCAGAGCTGGAAAACACACTCAGGGATTTTTGTGGCCATGTGTCGGAGGCACCTGATATGATGTTCTTCCACCCATTGCACTCGCAATTGGAGCTTGGATCTTCGTATGTACATAATCCCGCGGCCATCACTGGTAACTTAAGCAATGACCAGGATGAAATGCAGTTCAAAAATGGCACAACTGCGGTTGACGTTACCAACTTCTTGGACTCGGTACTACTTAGCTCAGATGAGCATTCCTCTGAAGATTATCACATTAACATGATTTCAACTGTCGAAACCGAAAGCCCCAGGTATATTAACATGATTTCAACTGTTGAAAGTGAAAGCCCCAAGTATATTAATTCTTTGGAGAGGGTTTATGTTGAGGACGGCAGATTGTGTAGAGAGTCAGGTGGGCCAGTGGCCCAAGGACAGCTTGGTCCCGGCTATTCTGAAGGTGGGTCTTACATGGACAACATTGCTCCTTTACATATGGAAACAGCTTCAGGAGCTTACGTAACTCCTGATATTGTAAATAACGAGGAAAGAAGAAACACGGGTTTCCTGCAAAACAGACCAGACTATTTATCTACTGTTTCTGATGGCAACCAATCCTACAGTTTGTTCAATAGTGTTGAAGAACAGCAGATTCATATCAGTACCGTTATGGGTGGAGATAATTTTGGAAGTGGAGTCAGAATAAGACCTCGCCAGCCTCGAATTCAAAGTCCCCAAAACTTTGTTTCGCAAGGAAACGCTTCAAGAAGACTCCGTTTGCAAATTGAATCTCCATTTGGATCCAGATCAGCTTTCTGTAGCCTGCCAAAAGAGCCCATTCACAGCGAAGAAAATTCTGAACTAAAACCAACAACGGATGAGGCTGAAAAGGATGAAGAGAAGCATACTCCTGTTGGTGCAAGCATAGATAATACCCAGGAAAAACACCCTCTGAGAGCCAATAGCGATGAAGATGCTGCTCGAGGGAGTTTGACTGCGAAGTCAAAATGTGATTCTCCTCCTGGTGGCAGCAACGTCGAGGCTACTCCAGCATTTTTTTCAGTTTCATCACGTGTGTACATGCCAGTGGTACTTGTGGCTTTAGGTTTGTTTGTAGTTGGTTTTAGCGTAGTGGGATGGTTTAAATTTTGATTTTGATTAGAGGAGAGAGCTAGCTAATTATGTGTATTATTAACCGAAGCTAGTAGGAGGATAAGGTAACACAATAGGTGGGTCCGTCCCTTTGATTTAAGA

Network for GWHGAAZE003727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0167

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	11	142	5.80E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	100.227
	SRR3591706	second leaf	8.509
	SRR3591707	mature leaf	8.495
	SRR3591708	Shoot apex	36.213
	SRR3591709	Stem	73.902
	SRR3591710	White floral bud	45.132
	SRR3591711	White flower	67.955
	SRR3591712	Green floral bud	24.751
	SRR3591713	Yellow flower	47.220
SRP173429	SRR8316895	Juvenile bud stage	84.530
	SRR8316896	Juvenile bud stage	93.246
	SRR8316897	Juvenile bud stage	49.591
	SRR8316894	Third green stage	18.265
	SRR8316900	Third green stage	46.107
	SRR8316901	Third green stage	62.227
	SRR8316898	Complete white stage	22.866
	SRR8316899	Complete white stage	108.696
	SRR8316903	Complete white stage	42.370
	SRR8316902	Silver flowering stage	20.908
	SRR8316904	Silver flowering stage	26.184
	SRR8316905	Silver flowering stage	14.284
	SRR8316906	Gold flowering stage	49.460
	SRR8316907	Gold flowering stage	44.138
	SRR8316908	Gold flowering stage	33.155
SRP132670	SRR6706286	Control	29.684
	SRR6706287	Light intensity 50%	27.330
	SRR6706288	Light intensity 20%	24.200
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.479
	CNS0095593	Slightly white alabastrum(diploid) 2	72.653
	CNS0095594	Slightly white alabastrum(diploid) 3	65.719
	CNS0095595	Whole white alabastrum(diploid) 2	54.708
	CNS0095596	Whole white alabastrum(diploid) 3	17.204
	CNS0095597	Whole white alabastrum(diploid) 4	41.091
	CNS0095598	Silvery flower (diploied) 1	89.802
	CNS0095599	Silvery flower (diploied) 2	95.122
	CNS0095600	Silvery flower (diploied) 3	70.014
	CNS0095601	Golden flower (diploid) 1	113.142
	CNS0095602	Golden flower (diploid) 2	97.497
	CNS0095603	Golden flower (diploid) 3	94.976
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.817
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.408
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.516
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.734
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.838
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.696
	CNS0095610	Silvery flower (tetraploid) 1	25.950
	CNS0095611	Silvery flower (tetraploid) 2	24.388
	CNS0095612	Silvery flower (tetraploid) 3	21.782
	CNS0095613	Golden flower (tetraploid) 1	15.713
	CNS0095614	Golden flower (tetraploid) 2	21.569
	CNS0095615	Golden flower (tetraploid) 3	16.481
CRA001975	CRR073297	Stem 1	58.925
	CRR073298	Stem 2	51.202
	CRR073299	Stem 3	37.796
	CRR073300	Leaf 1	76.743
	CRR073301	Leaf 2	80.008
	CRR073302	Leaf 3	39.354
	CRR073303	Juvenile bud 1	31.580
	CRR073304	Juvenile bud 2	24.194
	CRR073305	Juvenile bud 3	53.379
	CRR073306	Third green 1	17.226
	CRR073307	Third green 2	16.244
	CRR073308	Third green 3	15.573
	CRR073309	Second white 1	12.653
	CRR073310	Second white 2	15.639
	CRR073311	Second white 3	18.124
	CRR073312	Silver flowering 1	25.388
	CRR073313	Silver flowering 2	21.484
	CRR073314	Silver flowering 3	20.117
	CRR073315	Gold flowering 1	14.971
	CRR073316	Gold flowering 2	26.926
	CRR073317	Gold flowering 3	10.609
	CRR073318	Tawny withering 1	64.315
	CRR073319	Tawny withering 2	67.172
	CRR073320	Tawny withering 3	63.737