Gene detail

Detail information of GWHGAAZE003739

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHF99232.1	0	hypothetical protein F383_19968 [Gossypium arboreum]
COG	YP_002296383.1	7E-126	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
Swissprot	tr\|Q8RWN9\|ODP22_ARATH	0	Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial (Precursor)
trEMBL	tr\|B9GVD4\|B9GVD4_POPTR	0	Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256\|RuleBase:RU361137}
TAIR10	AT3G13930.1	0	Dihydrolipoamide acetyltransferase, long form protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	103167364	103175636	+
GWHAAZE00000001	mRNA	103167364	103175636	+
GWHAAZE00000001	exon	103167364	103167456	+
GWHAAZE00000001	exon	103167527	103167601	+
GWHAAZE00000001	exon	103167710	103167802	+
GWHAAZE00000001	exon	103170285	103170524	+
GWHAAZE00000001	exon	103170660	103170732	+
GWHAAZE00000001	exon	103171672	103171760	+
GWHAAZE00000001	exon	103171949	103172034	+
GWHAAZE00000001	exon	103172123	103172198	+
GWHAAZE00000001	exon	103173776	103173843	+
GWHAAZE00000001	exon	103173923	103173989	+
GWHAAZE00000001	exon	103174395	103174490	+
GWHAAZE00000001	exon	103174584	103174686	+
GWHAAZE00000001	exon	103174798	103174896	+
GWHAAZE00000001	exon	103175033	103175636	+
GWHAAZE00000001	CDS	103167364	103167456	+
GWHAAZE00000001	CDS	103167527	103167601	+
GWHAAZE00000001	CDS	103167710	103167802	+
GWHAAZE00000001	CDS	103170285	103170524	+
GWHAAZE00000001	CDS	103170660	103170732	+
GWHAAZE00000001	CDS	103171672	103171760	+
GWHAAZE00000001	CDS	103171949	103172034	+
GWHAAZE00000001	CDS	103172123	103172198	+
GWHAAZE00000001	CDS	103173776	103173843	+
GWHAAZE00000001	CDS	103173923	103173989	+
GWHAAZE00000001	CDS	103174395	103174490	+
GWHAAZE00000001	CDS	103174584	103174686	+
GWHAAZE00000001	CDS	103174798	103174896	+
GWHAAZE00000001	CDS	103175033	103175103	+
GWHAAZE00000001	three_prime_UTR	103175104	103175636	+

Transcript Sequence
>GWHTAAZE003745 ACTTATAAACGTTCTGTGGATTGTCTTTCAGGCCTTCCCCCACACCAAGAGATTGGGATGCCTTCTCTTTCACCAACAATGACGGAGGCATGTGGAAATATTGCAAGATGGTTGAAGAAAGAGGGTGATAAAGTTTCTCCTGGTGAAGTACTATGTGAAGTTGAAACCGATAAAGCAACGGTAGAGATGGAATGCATGGAGGAAGGATATCTTGCTAAGATTATACATGGAGATGGAGCAAAAGAAATTAAAGTCGGTGAGGTGATTGCAATAACCGTTGAAGATGAGGAGGATGCTGCAAAATTCAAAGATTACAAACCTTCAACATCAGATGCTTCCGCTGCCCCTAAAGACCAACCTGCTGCTGCTCCACCCAAAGAAGAGATTGTTGAGAAACCTGTCAGTTCACCTGAGCCAAAAGCTTCCAAGCCCAGTCCATCTCCCAAGGGAGATCGCATATTTGCCAGTCCTCTGGCTAGAAAGTTGGCTGAAGATCACAATGTTCCTCTGTCAAGCATCAAAGGAACAGGTCCTGATGGAGTCATAGTTAAGGCTGACATTGAAGATTACTTGGCTTCTGGTAGGAAGGAAGTTTCAGCAGGAGCACCTAAGGTTGACACAGCTTTAGGTTACACAGATATCCCTCATTCTCAGATAAGAAAGGTCACAGCTTCGCGATTGTTACTCTCAAAGCAAACAATTCCCCATTACTACTTAACTGTAGATACATGTGTTGACAAGCTTATAGACATGAGGACCAGACTTAACTCCCTGCAGGAAGCTTCTGGGGGGAAGAAGTTATCTGTTAACGATCTTGTTATTAAGGCTGCTGCTTTGGCTCTTCGAAAAGTTCCACAGTGCAACAGTTCCTGGACCAATGAATATATTCGACAGTATCAAAACGTGAACATCAATGTTGCAGTTCAGACCGACAATGGACTGTATGTCCCGGTTATCAGGGATGCCGACAAGAAGGGTTTATCCACAATTTCTGAGGATGTGAAGAACTTGGCACAAAAAGCTAGAGAGAACAGCTTAAAGCCAGAAGATTATGAGGGAGGCACATTTACCGTGTCTAATTTGGGAGGCCCATTTGGCATCAAACAGTTTTGCGCCATCATTAATCCTCCACAGGCAGGAATTTTAGCTGTTGGGTCCGCTGAGAAGAGGGTTGTTCCTGCTGCTCCGGGGCCAGATCAATTCAAGTTTGCTTCCTTTATGTCTGTTACGTTGAGCTGTGATCATCGTGTTATTGATGGTGCTATTGGTGCGGAATGGCTGAAAGCATTCAAGGGCTACATTGAGAATCCGGAGTCCATGTTGCTTTAGAGAAATTAAATTTCTTTTTTACTTCCCAGTAAAATCTTTTCTTTTCTTTTTTAATTCCGCGTTACTAATCGAGAGTGTTCCCCTGGCTTTGATTTCGTCATGCTAGTGTAGTTATTCTGCCCATGAGAGCCCATGGGCTAGAAGATTTTGGAATAAAGGCCCCGTTGATTAATTTAGCTAGCTCCGTGTAGTGTTTCTACAGCCCTTTCGCTTTTGTATTCAGCTGATTTTGTCTGCTTTTCCAGAGCGAGTATTGTAAGAATTTGTCGGATCTGCCATTCAAATCTTCCAATGGATAATTCCTATCTCTGTTCAATAAGCAATACAACCAAAGCCAATGTAATTTTATTTTTGACCTTTTCTGGACCAAAATTATTTGCATACGTCAAATAAAAATGTATTCGTTAGTTTTGTTCTCTTGCTTCATGTCAACCCATTAACTCGTCAACATCAAGTTTTGAGATGCAAGGATTATCAATCGAAGTTTATCTAAAGTGTTTTTGTTTTGTCATTTCCCCTTCTGTTCTTTTATA

Network for GWHGAAZE003739

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.23	Biotin_lipoyl	17	91	8.90E-18
PF02817.18	E3_binding	153	188	5.40E-15
PF00198.24	2-oxoacid_dh	211	442	1.60E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00627	DLAT, aceF, pdhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620

Gene Ontology

GO term	Ontology	Name
GO:0006090	biological_process	pyruvate metabolic process
GO:0045254	cellular_component	pyruvate dehydrogenase complex
GO:0016746	molecular_function	transferase activity, transferring acyl groups
GO:0004742	molecular_function	dihydrolipoyllysine-residue acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	106.229
	SRR3591706	second leaf	45.914
	SRR3591707	mature leaf	27.979
	SRR3591708	Shoot apex	74.956
	SRR3591709	Stem	61.783
	SRR3591710	White floral bud	91.287
	SRR3591711	White flower	108.601
	SRR3591712	Green floral bud	123.816
	SRR3591713	Yellow flower	107.880
SRP173429	SRR8316895	Juvenile bud stage	56.352
	SRR8316896	Juvenile bud stage	90.020
	SRR8316897	Juvenile bud stage	50.285
	SRR8316894	Third green stage	41.411
	SRR8316900	Third green stage	144.148
	SRR8316901	Third green stage	131.426
	SRR8316898	Complete white stage	50.533
	SRR8316899	Complete white stage	86.446
	SRR8316903	Complete white stage	79.108
	SRR8316902	Silver flowering stage	60.156
	SRR8316904	Silver flowering stage	81.282
	SRR8316905	Silver flowering stage	38.767
	SRR8316906	Gold flowering stage	150.163
	SRR8316907	Gold flowering stage	154.882
	SRR8316908	Gold flowering stage	185.932
SRP132670	SRR6706286	Control	63.974
	SRR6706287	Light intensity 50%	69.242
	SRR6706288	Light intensity 20%	74.927
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	86.751
	CNS0095593	Slightly white alabastrum(diploid) 2	88.700
	CNS0095594	Slightly white alabastrum(diploid) 3	74.369
	CNS0095595	Whole white alabastrum(diploid) 2	81.191
	CNS0095596	Whole white alabastrum(diploid) 3	93.403
	CNS0095597	Whole white alabastrum(diploid) 4	71.126
	CNS0095598	Silvery flower (diploied) 1	50.453
	CNS0095599	Silvery flower (diploied) 2	47.523
	CNS0095600	Silvery flower (diploied) 3	97.307
	CNS0095601	Golden flower (diploid) 1	40.167
	CNS0095602	Golden flower (diploid) 2	83.478
	CNS0095603	Golden flower (diploid) 3	78.619
	CNS0095604	Slightly white alabastrum(tetraploid) 1	101.392
	CNS0095605	Slightly white alabastrum(tetraploid) 2	92.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.832
	CNS0095607	Whole white alabastrum(tetraploid) 1	94.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	95.794
	CNS0095609	Whole white alabastrum(tetraploid) 3	122.270
	CNS0095610	Silvery flower (tetraploid) 1	83.204
	CNS0095611	Silvery flower (tetraploid) 2	78.763
	CNS0095612	Silvery flower (tetraploid) 3	91.230
	CNS0095613	Golden flower (tetraploid) 1	58.200
	CNS0095614	Golden flower (tetraploid) 2	86.288
	CNS0095615	Golden flower (tetraploid) 3	75.636
CRA001975	CRR073297	Stem 1	75.404
	CRR073298	Stem 2	71.102
	CRR073299	Stem 3	68.802
	CRR073300	Leaf 1	93.604
	CRR073301	Leaf 2	87.162
	CRR073302	Leaf 3	89.342
	CRR073303	Juvenile bud 1	95.760
	CRR073304	Juvenile bud 2	84.080
	CRR073305	Juvenile bud 3	98.402
	CRR073306	Third green 1	63.859
	CRR073307	Third green 2	51.323
	CRR073308	Third green 3	58.606
	CRR073309	Second white 1	89.480
	CRR073310	Second white 2	85.110
	CRR073311	Second white 3	91.794
	CRR073312	Silver flowering 1	96.344
	CRR073313	Silver flowering 2	91.114
	CRR073314	Silver flowering 3	97.668
	CRR073315	Gold flowering 1	22.013
	CRR073316	Gold flowering 2	34.311
	CRR073317	Gold flowering 3	24.046
	CRR073318	Tawny withering 1	57.616
	CRR073319	Tawny withering 2	52.116
	CRR073320	Tawny withering 3	54.815