Gene detail

Detail information of GWHGAAZE003758

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075767.1	4.6008E-122	PREDICTED: alcohol dehydrogenase class-3-like [Sesamum indicum]
COG	NP_967848.1	7E-65	alcohol dehydrogenase / formaldehyde dehydrogenase
Swissprot	tr\|A1L4Y2\|ADHL3_ARATH	1E-69	Alcohol dehydrogenase-like 3
trEMBL	tr\|A0A068U9Y1\|A0A068U9Y1_COFCA	4E-116	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05004.1}
TAIR10	AT1G32780.1	3E-49	GroES-like zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	103424475	103425983	+
GWHAAZE00000001	mRNA	103424475	103425983	+
GWHAAZE00000001	exon	103424475	103424512	+
GWHAAZE00000001	exon	103425156	103425591	+
GWHAAZE00000001	exon	103425690	103425983	+
GWHAAZE00000001	CDS	103424475	103424512	+
GWHAAZE00000001	CDS	103425156	103425591	+
GWHAAZE00000001	CDS	103425690	103425983	+

Transcript Sequence
>GWHTAAZE003764 CCTCTGTTCCCACGAGTTCTTGGACACGAAGGTGTTGGGGGATGCATACATGGATGGGGTGCATGCAGCATGGTTGAGAGTGTAGGGGAAGGAGTGAAAGAGTTGAGAGAAGGAGACATTGTAATCCCAACATATTTGGGAGAGTGCGGAGAATGCGAGAATTGCAGTTCAGGCAAGACAAATCTGTGCCAGACCTATCCTCTACAAGCTTTCACCGGTTTATTCCCCGATGATACCTCAAGAATGTCCATTAAAGGACAAAGACTTTACCACTTCCTCAGCTGCTCTACTTGGTCAGAGTACACTGTCGTTGATTCTAACTACGTTGTCAAGATTGATCCCAGGATACCTCTCCCGCATGCTAGCTTCCTTTCTTGCGGCTTCTCCACTGGATTTGGGGCTTGCTGGAAGGAAGCCATGGTTGCCAAGGGATCAAGTGTCGCTGTTCTAGGTCTTGGTGCTGTAGGACTCGGAGTAGTAGAGGGTGCTCGAGTGCACGGGGCGGCTAAAATAATTGGAATCGACATAAATGAGAGTAAACGGGAAAAGGCAGAGGCCTTTGGAATGACACACTTTATCAATCCTAAAAGTTCTTCTGCAGAAAATAAATCCATTTCGGAATTGGTCATGGAGGTTACCGAAGGAAGAGGCGTCGACAATAGCTTCGAGTGTACCGGTGTCCCCGCCTTAGTCAACCAGGCCCTTGAATCAACAAAAGTGGTATATATAAGTATCTCTAATATATATATATATATAGTTAGCAATTAA

Network for GWHGAAZE003758

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	4	112	3.40E-11
PF00107.27	ADH_zinc_N	154	239	1.20E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00121	frmA, ADH5, adhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Fatty acid degradation	map00071
		Tyrosine metabolism	map00350
		Retinol metabolism	map00830
		Chloroalkane and chloroalkene degradation	map00625
		Naphthalene degradation	map00626
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.391
	SRR3591706	second leaf	279.257
	SRR3591707	mature leaf	48.625
	SRR3591708	Shoot apex	154.178
	SRR3591709	Stem	6.766
	SRR3591710	White floral bud	7.921
	SRR3591711	White flower	5.402
	SRR3591712	Green floral bud	23.128
	SRR3591713	Yellow flower	7.672
SRP173429	SRR8316895	Juvenile bud stage	88.929
	SRR8316896	Juvenile bud stage	65.761
	SRR8316897	Juvenile bud stage	40.730
	SRR8316894	Third green stage	18.670
	SRR8316900	Third green stage	31.539
	SRR8316901	Third green stage	42.014
	SRR8316898	Complete white stage	22.483
	SRR8316899	Complete white stage	79.769
	SRR8316903	Complete white stage	38.565
	SRR8316902	Silver flowering stage	14.818
	SRR8316904	Silver flowering stage	17.540
	SRR8316905	Silver flowering stage	10.646
	SRR8316906	Gold flowering stage	21.541
	SRR8316907	Gold flowering stage	25.525
	SRR8316908	Gold flowering stage	24.817
SRP132670	SRR6706286	Control	59.717
	SRR6706287	Light intensity 50%	53.379
	SRR6706288	Light intensity 20%	57.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	134.367
	CNS0095593	Slightly white alabastrum(diploid) 2	115.405
	CNS0095594	Slightly white alabastrum(diploid) 3	143.903
	CNS0095595	Whole white alabastrum(diploid) 2	219.874
	CNS0095596	Whole white alabastrum(diploid) 3	29.124
	CNS0095597	Whole white alabastrum(diploid) 4	166.123
	CNS0095598	Silvery flower (diploied) 1	54.792
	CNS0095599	Silvery flower (diploied) 2	47.382
	CNS0095600	Silvery flower (diploied) 3	42.128
	CNS0095601	Golden flower (diploid) 1	26.879
	CNS0095602	Golden flower (diploid) 2	34.209
	CNS0095603	Golden flower (diploid) 3	34.432
	CNS0095604	Slightly white alabastrum(tetraploid) 1	97.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	164.958
	CNS0095606	Slightly white alabastrum(tetraploid) 3	308.347
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.894
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.996
	CNS0095610	Silvery flower (tetraploid) 1	54.639
	CNS0095611	Silvery flower (tetraploid) 2	44.922
	CNS0095612	Silvery flower (tetraploid) 3	23.185
	CNS0095613	Golden flower (tetraploid) 1	27.289
	CNS0095614	Golden flower (tetraploid) 2	31.594
	CNS0095615	Golden flower (tetraploid) 3	8.950
CRA001975	CRR073297	Stem 1	75.472
	CRR073298	Stem 2	80.514
	CRR073299	Stem 3	97.237
	CRR073300	Leaf 1	44.497
	CRR073301	Leaf 2	46.862
	CRR073302	Leaf 3	36.317
	CRR073303	Juvenile bud 1	45.461
	CRR073304	Juvenile bud 2	52.318
	CRR073305	Juvenile bud 3	60.815
	CRR073306	Third green 1	22.505
	CRR073307	Third green 2	21.456
	CRR073308	Third green 3	25.373
	CRR073309	Second white 1	6.211
	CRR073310	Second white 2	8.002
	CRR073311	Second white 3	4.368
	CRR073312	Silver flowering 1	2.579
	CRR073313	Silver flowering 2	2.845
	CRR073314	Silver flowering 3	2.850
	CRR073315	Gold flowering 1	26.506
	CRR073316	Gold flowering 2	33.899
	CRR073317	Gold flowering 3	38.934
	CRR073318	Tawny withering 1	205.536
	CRR073319	Tawny withering 2	168.276
	CRR073320	Tawny withering 3	362.852