Detail information of GWHGAAZE003778


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002307913.10POLLEN-PISTIL INTERACTION 2 family protein [Populus trichocarpa]
COGYP_002297234.12E-159class III aminotransferase
Swissprottr|Q84P54|GATP1_SOLLC0Gamma aminobutyrate transaminase 1, mitochondrial (Precursor)
trEMBLtr|B9HD62|B9HD62_POPTR0POLLEN-PISTIL INTERACTION 2 family protein {ECO:0000313|EMBL:EEE91436.1}
TAIR10AT3G22200.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene103987126103994900-
GWHAAZE00000001mRNA103987126103994900-
GWHAAZE00000001exon103994831103994900-
GWHAAZE00000001exon103994663103994747-
GWHAAZE00000001exon103994376103994442-
GWHAAZE00000001exon103994097103994169-
GWHAAZE00000001exon103993540103993637-
GWHAAZE00000001exon103993359103993451-
GWHAAZE00000001exon103992070103992143-
GWHAAZE00000001exon103991947103991985-
GWHAAZE00000001exon103991764103991852-
GWHAAZE00000001exon103991180103991256-
GWHAAZE00000001exon103991006103991047-
GWHAAZE00000001exon103990433103990480-
GWHAAZE00000001exon103989631103989714-
GWHAAZE00000001exon103989070103989157-
GWHAAZE00000001exon103988889103988967-
GWHAAZE00000001exon103988628103988718-
GWHAAZE00000001exon103988455103988533-
GWHAAZE00000001exon103988204103988319-
GWHAAZE00000001exon103987126103987609-
GWHAAZE00000001CDS103994831103994900-
GWHAAZE00000001CDS103994663103994747-
GWHAAZE00000001CDS103994376103994442-
GWHAAZE00000001CDS103994097103994169-
GWHAAZE00000001CDS103993540103993637-
GWHAAZE00000001CDS103993359103993451-
GWHAAZE00000001CDS103992070103992143-
GWHAAZE00000001CDS103991947103991985-
GWHAAZE00000001CDS103991764103991852-
GWHAAZE00000001CDS103991180103991256-
GWHAAZE00000001CDS103991006103991047-
GWHAAZE00000001CDS103990433103990480-
GWHAAZE00000001CDS103989631103989714-
GWHAAZE00000001CDS103989070103989157-
GWHAAZE00000001CDS103988889103988967-
GWHAAZE00000001CDS103988628103988718-
GWHAAZE00000001CDS103988455103988533-
GWHAAZE00000001CDS103988204103988319-
GWHAAZE00000001CDS103987535103987609-
GWHAAZE00000001three_prime_UTR103987126103987534-
Transcript Sequence

Network for GWHGAAZE003778

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.22Aminotran_3754731.30E-77
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K16871POP2 Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Butanoate metabolismmap00650
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0008483molecular_functiontransaminase activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf141.291
SRR3591706second leaf51.080
SRR3591707mature leaf60.185
SRR3591708Shoot apex98.233
SRR3591709Stem178.364
SRR3591710White floral bud71.593
SRR3591711White flower60.287
SRR3591712Green floral bud84.198
SRR3591713Yellow flower51.247
SRP173429 SRR8316895Juvenile bud stage 44.521
SRR8316896Juvenile bud stage 69.212
SRR8316897Juvenile bud stage 35.309
SRR8316894Third green stage 25.501
SRR8316900Third green stage 69.051
SRR8316901Third green stage 74.294
SRR8316898Complete white stage 24.807
SRR8316899Complete white stage 97.430
SRR8316903Complete white stage 40.255
SRR8316902Silver flowering stage11.603
SRR8316904Silver flowering stage16.066
SRR8316905Silver flowering stage6.140
SRR8316906Gold flowering stage 15.929
SRR8316907Gold flowering stage 20.803
SRR8316908Gold flowering stage 22.342
SRP132670SRR6706286Control60.749
SRR6706287Light intensity 50%58.181
SRR6706288Light intensity 20%57.145
CNP0000432CNS0095592Slightly white alabastrum(diploid) 173.279
CNS0095593Slightly white alabastrum(diploid) 259.562
CNS0095594Slightly white alabastrum(diploid) 376.327
CNS0095595Whole white alabastrum(diploid) 256.427
CNS0095596Whole white alabastrum(diploid) 351.225
CNS0095597Whole white alabastrum(diploid) 455.711
CNS0095598Silvery flower (diploied) 178.360
CNS0095599Silvery flower (diploied) 273.719
CNS0095600Silvery flower (diploied) 365.527
CNS0095601Golden flower (diploid) 172.434
CNS0095602Golden flower (diploid) 268.653
CNS0095603Golden flower (diploid) 365.380
CNS0095604Slightly white alabastrum(tetraploid) 175.982
CNS0095605Slightly white alabastrum(tetraploid) 264.903
CNS0095606Slightly white alabastrum(tetraploid) 377.689
CNS0095607Whole white alabastrum(tetraploid) 155.815
CNS0095608Whole white alabastrum(tetraploid) 253.820
CNS0095609Whole white alabastrum(tetraploid) 368.380
CNS0095610Silvery flower (tetraploid) 173.813
CNS0095611Silvery flower (tetraploid) 283.953
CNS0095612Silvery flower (tetraploid) 359.378
CNS0095613Golden flower (tetraploid) 140.756
CNS0095614Golden flower (tetraploid) 270.008
CNS0095615Golden flower (tetraploid) 329.651
CRA001975CRR073297Stem 155.026
CRR073298Stem 246.665
CRR073299Stem 345.336
CRR073300Leaf 145.117
CRR073301Leaf 249.818
CRR073302Leaf 338.491
CRR073303Juvenile bud 139.346
CRR073304Juvenile bud 230.863
CRR073305Juvenile bud 370.742
CRR073306Third green 111.769
CRR073307Third green 211.100
CRR073308Third green 310.412
CRR073309Second white 18.020
CRR073310Second white 26.443
CRR073311Second white 35.667
CRR073312Silver flowering 16.038
CRR073313Silver flowering 28.482
CRR073314Silver flowering 37.628
CRR073315Gold flowering 152.953
CRR073316Gold flowering 277.750
CRR073317Gold flowering 349.274
CRR073318Tawny withering 158.514
CRR073319Tawny withering 263.084
CRR073320Tawny withering 362.553